Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC11O43248 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
HOXC11O43248 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
HOXC11O43248 GNAS-203ENST00000306120 1878 ntBASIC17.33■□□□□ 0.37
HOXC11O43248 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.33■□□□□ 0.37
HOXC11O43248 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC11O43248 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC11O43248 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC11O43248 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.33■□□□□ 0.37
HOXC11O43248 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HOXC11O43248 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.33■□□□□ 0.37
HOXC11O43248 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HOXC11O43248 AC020763.4-201ENST00000623414 4170 ntBASIC17.33■□□□□ 0.36
HOXC11O43248 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.33■□□□□ 0.36
HOXC11O43248 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC11O43248 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC11O43248 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC11O43248 TFAMP1-201ENST00000412727 736 ntBASIC17.33■□□□□ 0.36
HOXC11O43248 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.33■□□□□ 0.36
HOXC11O43248 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
HOXC11O43248 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.33■□□□□ 0.36
HOXC11O43248 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
HOXC11O43248 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.33■□□□□ 0.36
HOXC11O43248 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.33■□□□□ 0.36
HOXC11O43248 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.33■□□□□ 0.36
HOXC11O43248 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.33■□□□□ 0.36
HOXC11O43248 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.33■□□□□ 0.36
HOXC11O43248 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.33■□□□□ 0.36
HOXC11O43248 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.33■□□□□ 0.36
HOXC11O43248 AC009093.7-201ENST00000623853 1223 ntBASIC17.33■□□□□ 0.36
HOXC11O43248 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC11O43248 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.33■□□□□ 0.36
HOXC11O43248 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
HOXC11O43248 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC11O43248 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
HOXC11O43248 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC11O43248 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC11O43248 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC11O43248 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC11O43248 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC11O43248 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HOXC11O43248 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HOXC11O43248 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC11O43248 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.32■□□□□ 0.36
HOXC11O43248 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
HOXC11O43248 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC11O43248 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
HOXC11O43248 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HOXC11O43248 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.32■□□□□ 0.36
HOXC11O43248 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
HOXC11O43248 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC11O43248 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.32■□□□□ 0.36
HOXC11O43248 AC004449.1-201ENST00000564240 433 ntBASIC17.32■□□□□ 0.36
HOXC11O43248 AL135744.1-201ENST00000565098 629 ntBASIC17.32■□□□□ 0.36
HOXC11O43248 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.32■□□□□ 0.36
HOXC11O43248 AC106028.4-201ENST00000614509 607 ntBASIC17.32■□□□□ 0.36
HOXC11O43248 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.32■□□□□ 0.36
HOXC11O43248 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC11O43248 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HOXC11O43248 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.32■□□□□ 0.36
HOXC11O43248 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HOXC11O43248 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC11O43248 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HOXC11O43248 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HOXC11O43248 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HOXC11O43248 TNRC18P3-201ENST00000441896 2691 ntBASIC17.31■□□□□ 0.36
HOXC11O43248 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 AC134043.2-201ENST00000624206 2238 ntBASIC17.31■□□□□ 0.36
HOXC11O43248 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
HOXC11O43248 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
HOXC11O43248 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 AC079140.1-201ENST00000508039 487 ntBASIC17.31■□□□□ 0.36
HOXC11O43248 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXC11O43248 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.31■□□□□ 0.36
HOXC11O43248 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXC11O43248 AC243562.1-201ENST00000560672 389 ntBASIC17.31■□□□□ 0.36
HOXC11O43248 AC025678.2-201ENST00000562061 970 ntBASIC17.31■□□□□ 0.36
HOXC11O43248 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms