Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 AL391256.1-201ENST00000443260 1855 ntBASIC18.35■□□□□ 0.53
SIX2Q9NPC8 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 HTR7P1-202ENST00000624664 4411 ntBASIC18.35■□□□□ 0.53
SIX2Q9NPC8 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 LINC00895-201ENST00000629028 1637 ntBASIC18.34■□□□□ 0.53
SIX2Q9NPC8 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 PAWRP1-201ENST00000451083 565 ntBASIC18.34■□□□□ 0.53
SIX2Q9NPC8 SAPCD2P3-201ENST00000455031 850 ntBASIC18.34■□□□□ 0.53
SIX2Q9NPC8 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 AC021087.4-201ENST00000563761 564 ntBASIC18.34■□□□□ 0.53
SIX2Q9NPC8 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.34■□□□□ 0.53
SIX2Q9NPC8 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SIX2Q9NPC8 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SIX2Q9NPC8 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.33■□□□□ 0.53
SIX2Q9NPC8 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.33■□□□□ 0.53
SIX2Q9NPC8 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SIX2Q9NPC8 KRT8P49-201ENST00000604166 1432 ntBASIC18.33■□□□□ 0.53
SIX2Q9NPC8 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.53
SIX2Q9NPC8 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.33■□□□□ 0.53
SIX2Q9NPC8 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.33■□□□□ 0.53
SIX2Q9NPC8 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.33■□□□□ 0.53
SIX2Q9NPC8 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SIX2Q9NPC8 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 AC139887.3-201ENST00000568585 713 ntBASIC18.33■□□□□ 0.52
SIX2Q9NPC8 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 IFNL4P1-201ENST00000607083 540 ntBASIC18.33■□□□□ 0.52
SIX2Q9NPC8 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.33■□□□□ 0.52
SIX2Q9NPC8 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
SIX2Q9NPC8 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 AC006504.4-201ENST00000592118 1568 ntBASIC18.31■□□□□ 0.52
SIX2Q9NPC8 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms