Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX2Q99626 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX2Q99626 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX2Q99626 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.65■□□□□ 0.42
CDX2Q99626 AL020996.1-203ENST00000536896 2307 ntBASIC17.65■□□□□ 0.42
CDX2Q99626 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CDX2Q99626 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CDX2Q99626 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDX2Q99626 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.64■□□□□ 0.42
CDX2Q99626 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.42
CDX2Q99626 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDX2Q99626 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDX2Q99626 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDX2Q99626 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CDX2Q99626 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.64■□□□□ 0.41
CDX2Q99626 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDX2Q99626 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.64■□□□□ 0.41
CDX2Q99626 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDX2Q99626 KRT18P34-201ENST00000488218 1270 ntBASIC17.64■□□□□ 0.41
CDX2Q99626 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.64■□□□□ 0.41
CDX2Q99626 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.64■□□□□ 0.41
CDX2Q99626 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CDX2Q99626 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.64■□□□□ 0.41
CDX2Q99626 AC079328.1-201ENST00000560358 952 ntBASIC17.64■□□□□ 0.41
CDX2Q99626 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.64■□□□□ 0.41
CDX2Q99626 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.64■□□□□ 0.41
CDX2Q99626 AC004461.2-201ENST00000629517 803 ntBASIC17.64■□□□□ 0.41
CDX2Q99626 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDX2Q99626 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDX2Q99626 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDX2Q99626 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.63■□□□□ 0.41
CDX2Q99626 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.63■□□□□ 0.41
CDX2Q99626 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CDX2Q99626 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.63■□□□□ 0.41
CDX2Q99626 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.63■□□□□ 0.41
CDX2Q99626 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC17.63■□□□□ 0.41
CDX2Q99626 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.63■□□□□ 0.41
CDX2Q99626 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
CDX2Q99626 NAT9-224ENST00000583757 583 ntTSL 3 BASIC17.63■□□□□ 0.41
CDX2Q99626 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.63■□□□□ 0.41
CDX2Q99626 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.63■□□□□ 0.41
CDX2Q99626 MIR8072-201ENST00000614241 80 ntBASIC17.63■□□□□ 0.41
CDX2Q99626 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.63■□□□□ 0.41
CDX2Q99626 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.63■□□□□ 0.41
CDX2Q99626 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.63■□□□□ 0.41
CDX2Q99626 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CDX2Q99626 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX2Q99626 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.63■□□□□ 0.41
CDX2Q99626 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.62■□□□□ 0.41
CDX2Q99626 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX2Q99626 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDX2Q99626 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX2Q99626 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.62■□□□□ 0.41
CDX2Q99626 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX2Q99626 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CDX2Q99626 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX2Q99626 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX2Q99626 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX2Q99626 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC17.62■□□□□ 0.41
CDX2Q99626 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX2Q99626 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.62■□□□□ 0.41
CDX2Q99626 AL589987.1-201ENST00000453380 819 ntBASIC17.62■□□□□ 0.41
CDX2Q99626 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.62■□□□□ 0.41
CDX2Q99626 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.62■□□□□ 0.41
CDX2Q99626 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.62■□□□□ 0.41
CDX2Q99626 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.62■□□□□ 0.41
CDX2Q99626 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.62■□□□□ 0.41
CDX2Q99626 PRYP6-201ENST00000514804 343 ntBASIC17.62■□□□□ 0.41
CDX2Q99626 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.62■□□□□ 0.41
CDX2Q99626 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.62■□□□□ 0.41
CDX2Q99626 AL021578.1-201ENST00000613646 709 ntBASIC17.62■□□□□ 0.41
CDX2Q99626 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC17.62■□□□□ 0.41
CDX2Q99626 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.62■□□□□ 0.41
CDX2Q99626 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX2Q99626 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.62■□□□□ 0.41
CDX2Q99626 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX2Q99626 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.61■□□□□ 0.41
CDX2Q99626 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms