Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 KRT18P67-201ENST00000432816 1264 ntBASIC13.25□□□□□ -0.29
CCDC140Q96MF4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 OR7E14P-202ENST00000530490 1290 ntBASIC13.25□□□□□ -0.29
CCDC140Q96MF4 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 DUX4L17-201ENST00000557360 1267 ntBASIC13.25□□□□□ -0.29
CCDC140Q96MF4 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 AC006557.2-201ENST00000592985 1240 ntBASIC13.25□□□□□ -0.29
CCDC140Q96MF4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 AC006504.4-201ENST00000592118 1568 ntBASIC13.24□□□□□ -0.29
CCDC140Q96MF4 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 AF186996.4-201ENST00000467186 377 ntBASIC13.24□□□□□ -0.29
CCDC140Q96MF4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 AC011676.5-201ENST00000624864 2660 ntBASIC13.24□□□□□ -0.29
CCDC140Q96MF4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC140Q96MF4 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms