Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 COX20P2-201ENST00000452636 358 ntBASIC17.35■□□□□ 0.37
CHFRQ96EP1 RN7SL589P-201ENST00000481268 310 ntBASIC17.35■□□□□ 0.37
CHFRQ96EP1 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHFRQ96EP1 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHFRQ96EP1 AL009183.1-201ENST00000603760 355 ntBASIC17.35■□□□□ 0.37
CHFRQ96EP1 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHFRQ96EP1 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHFRQ96EP1 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHFRQ96EP1 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHFRQ96EP1 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHFRQ96EP1 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CHFRQ96EP1 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHFRQ96EP1 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 SLC25A1P3-201ENST00000395415 828 ntBASIC17.34■□□□□ 0.37
CHFRQ96EP1 KRT18P32-201ENST00000424695 1287 ntBASIC17.34■□□□□ 0.37
CHFRQ96EP1 AKAP8P1-201ENST00000434743 1349 ntBASIC17.34■□□□□ 0.37
CHFRQ96EP1 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 AL390961.4-201ENST00000623958 2535 ntBASIC17.34■□□□□ 0.37
CHFRQ96EP1 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHFRQ96EP1 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CHFRQ96EP1 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHFRQ96EP1 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHFRQ96EP1 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CHFRQ96EP1 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHFRQ96EP1 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CHFRQ96EP1 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CHFRQ96EP1 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
CHFRQ96EP1 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHFRQ96EP1 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHFRQ96EP1 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CHFRQ96EP1 HCG11-201ENST00000411553 5696 ntBASIC17.33■□□□□ 0.37
CHFRQ96EP1 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CHFRQ96EP1 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
CHFRQ96EP1 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.33■□□□□ 0.37
CHFRQ96EP1 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.33■□□□□ 0.37
CHFRQ96EP1 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.33■□□□□ 0.37
CHFRQ96EP1 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CHFRQ96EP1 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
CHFRQ96EP1 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 MIR4745-201ENST00000577608 62 ntBASIC17.33■□□□□ 0.36
CHFRQ96EP1 AC005412.3-201ENST00000580309 715 ntBASIC17.33■□□□□ 0.36
CHFRQ96EP1 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms