Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 AL589182.2-201ENST00000619332 1049 ntBASIC20.46■□□□□ 0.87
RNF20Q5VTR2 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF20Q5VTR2 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
RNF20Q5VTR2 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 SAPCD2P3-201ENST00000455031 850 ntBASIC20.45■□□□□ 0.86
RNF20Q5VTR2 FGFR3P6-201ENST00000457012 610 ntBASIC20.45■□□□□ 0.86
RNF20Q5VTR2 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 CLEC4GP1-201ENST00000596555 870 ntBASIC20.45■□□□□ 0.86
RNF20Q5VTR2 AL353135.1-201ENST00000606729 504 ntBASIC20.45■□□□□ 0.86
RNF20Q5VTR2 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF20Q5VTR2 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 KRT18P56-201ENST00000507275 550 ntBASIC20.44■□□□□ 0.86
RNF20Q5VTR2 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 TUBB8P12-201ENST00000308911 1335 ntBASIC20.44■□□□□ 0.86
RNF20Q5VTR2 TUBB7P-202ENST00000428444 1305 ntBASIC20.44■□□□□ 0.86
RNF20Q5VTR2 TUBB8P7-204ENST00000567960 1332 ntBASIC20.44■□□□□ 0.86
RNF20Q5VTR2 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
RNF20Q5VTR2 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 AC064862.7-201ENST00000604520 867 ntBASIC20.43■□□□□ 0.86
RNF20Q5VTR2 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF20Q5VTR2 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms