Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 FAM86C2P-203ENST00000528684 1004 ntBASIC18.16■□□□□ 0.5
USP41Q3LFD5 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 MIR4515-201ENST00000584082 81 ntBASIC18.16■□□□□ 0.5
USP41Q3LFD5 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP41Q3LFD5 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP41Q3LFD5 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP41Q3LFD5 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP41Q3LFD5 AC067852.2-201ENST00000590513 2313 ntBASIC18.16■□□□□ 0.5
USP41Q3LFD5 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP41Q3LFD5 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP41Q3LFD5 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
USP41Q3LFD5 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 AL671277.1-201ENST00000429656 993 ntBASIC18.15■□□□□ 0.5
USP41Q3LFD5 ADH5P3-201ENST00000433842 1137 ntBASIC18.15■□□□□ 0.5
USP41Q3LFD5 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 AC026120.1-201ENST00000611536 926 ntBASIC18.15■□□□□ 0.5
USP41Q3LFD5 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP41Q3LFD5 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.15■□□□□ 0.5
USP41Q3LFD5 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.14■□□□□ 0.5
USP41Q3LFD5 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP41Q3LFD5 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.14■□□□□ 0.49
USP41Q3LFD5 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USP41Q3LFD5 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP41Q3LFD5 AL355306.1-201ENST00000415580 579 ntBASIC18.14■□□□□ 0.49
USP41Q3LFD5 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.14■□□□□ 0.49
USP41Q3LFD5 TIMM8BP1-201ENST00000452384 211 ntBASIC18.14■□□□□ 0.49
USP41Q3LFD5 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.14■□□□□ 0.49
USP41Q3LFD5 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.14■□□□□ 0.49
USP41Q3LFD5 AC023141.5-201ENST00000458585 616 ntBASIC18.14■□□□□ 0.49
USP41Q3LFD5 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.14■□□□□ 0.49
USP41Q3LFD5 HLA-J-203ENST00000494367 1087 ntBASIC18.14■□□□□ 0.49
USP41Q3LFD5 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.14■□□□□ 0.49
USP41Q3LFD5 AC005412.3-201ENST00000580309 715 ntBASIC18.14■□□□□ 0.49
USP41Q3LFD5 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP41Q3LFD5 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP41Q3LFD5 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
USP41Q3LFD5 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP41Q3LFD5 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP41Q3LFD5 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.14■□□□□ 0.49
USP41Q3LFD5 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
USP41Q3LFD5 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.14■□□□□ 0.49
USP41Q3LFD5 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.13■□□□□ 0.49
USP41Q3LFD5 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
USP41Q3LFD5 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP41Q3LFD5 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
USP41Q3LFD5 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms