Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH1Q08174 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDH1Q08174 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH1Q08174 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PCDH1Q08174 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PCDH1Q08174 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDH1Q08174 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDH1Q08174 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PCDH1Q08174 MTDHP3-201ENST00000594186 672 ntBASIC16.53■□□□□ 0.24
PCDH1Q08174 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PCDH1Q08174 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PCDH1Q08174 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH1Q08174 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.53■□□□□ 0.24
PCDH1Q08174 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH1Q08174 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH1Q08174 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH1Q08174 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH1Q08174 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH1Q08174 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PCDH1Q08174 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDH1Q08174 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.52■□□□□ 0.24
PCDH1Q08174 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
PCDH1Q08174 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
PCDH1Q08174 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
PCDH1Q08174 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
PCDH1Q08174 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PCDH1Q08174 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
PCDH1Q08174 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDH1Q08174 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
PCDH1Q08174 TUBB8P12-201ENST00000308911 1335 ntBASIC16.52■□□□□ 0.24
PCDH1Q08174 TUBB7P-202ENST00000428444 1305 ntBASIC16.52■□□□□ 0.24
PCDH1Q08174 TUBB8P7-204ENST00000567960 1332 ntBASIC16.52■□□□□ 0.24
PCDH1Q08174 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDH1Q08174 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
PCDH1Q08174 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.52■□□□□ 0.24
PCDH1Q08174 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDH1Q08174 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
PCDH1Q08174 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
PCDH1Q08174 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDH1Q08174 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH1Q08174 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDH1Q08174 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.52■□□□□ 0.23
PCDH1Q08174 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.52■□□□□ 0.23
PCDH1Q08174 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDH1Q08174 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.52■□□□□ 0.23
PCDH1Q08174 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PCDH1Q08174 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PCDH1Q08174 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
PCDH1Q08174 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.52■□□□□ 0.23
PCDH1Q08174 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDH1Q08174 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
PCDH1Q08174 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PCDH1Q08174 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDH1Q08174 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PCDH1Q08174 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PCDH1Q08174 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.51■□□□□ 0.23
PCDH1Q08174 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.51■□□□□ 0.23
PCDH1Q08174 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.51■□□□□ 0.23
PCDH1Q08174 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PCDH1Q08174 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 AKR1C7P-201ENST00000305623 895 ntBASIC16.51■□□□□ 0.23
PCDH1Q08174 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.51■□□□□ 0.23
PCDH1Q08174 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PCDH1Q08174 BX005266.1-201ENST00000473402 457 ntBASIC16.51■□□□□ 0.23
PCDH1Q08174 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.51■□□□□ 0.23
PCDH1Q08174 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.51■□□□□ 0.23
PCDH1Q08174 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 AL139424.1-201ENST00000607572 797 ntBASIC16.51■□□□□ 0.23
PCDH1Q08174 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.51■□□□□ 0.23
PCDH1Q08174 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
PCDH1Q08174 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 AC092068.3-201ENST00000587894 2016 ntBASIC16.51■□□□□ 0.23
PCDH1Q08174 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.51■□□□□ 0.23
PCDH1Q08174 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.51■□□□□ 0.23
PCDH1Q08174 NKILA-202ENST00000614771 2598 ntBASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms