Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.26■□□□□ 0.67
TPM4P67936 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TPM4P67936 HLA-F-220ENST00000434407 884 ntBASIC19.26■□□□□ 0.67
TPM4P67936 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.26■□□□□ 0.67
TPM4P67936 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TPM4P67936 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.26■□□□□ 0.67
TPM4P67936 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.26■□□□□ 0.67
TPM4P67936 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.26■□□□□ 0.67
TPM4P67936 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.26■□□□□ 0.67
TPM4P67936 AL023973.1-201ENST00000624619 620 ntBASIC19.26■□□□□ 0.67
TPM4P67936 LINC01568-207ENST00000641790 1380 ntBASIC19.26■□□□□ 0.67
TPM4P67936 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.26■□□□□ 0.67
TPM4P67936 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TPM4P67936 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TPM4P67936 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.26■□□□□ 0.67
TPM4P67936 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TPM4P67936 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TPM4P67936 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TPM4P67936 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TPM4P67936 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TPM4P67936 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
TPM4P67936 KRT18P22-201ENST00000402024 1347 ntBASIC19.25■□□□□ 0.67
TPM4P67936 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM4P67936 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TPM4P67936 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TPM4P67936 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 AC006449.5-201ENST00000610658 2098 ntBASIC19.25■□□□□ 0.67
TPM4P67936 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.25■□□□□ 0.67
TPM4P67936 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.25■□□□□ 0.67
TPM4P67936 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 EGFEM1P-202ENST00000431685 1563 ntBASIC19.25■□□□□ 0.67
TPM4P67936 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.25■□□□□ 0.67
TPM4P67936 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.25■□□□□ 0.67
TPM4P67936 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM4P67936 AC109462.3-201ENST00000573934 613 ntBASIC19.25■□□□□ 0.67
TPM4P67936 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM4P67936 GPR32P1-201ENST00000601788 811 ntBASIC19.25■□□□□ 0.67
TPM4P67936 AP006294.2-201ENST00000641667 209 ntBASIC19.25■□□□□ 0.67
TPM4P67936 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 CYP2T1P-202ENST00000641596 2535 ntBASIC19.25■□□□□ 0.67
TPM4P67936 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM4P67936 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.25■□□□□ 0.67
TPM4P67936 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM4P67936 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TPM4P67936 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
TPM4P67936 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.24■□□□□ 0.67
TPM4P67936 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 AC010460.3-201ENST00000511359 1579 ntBASIC19.24■□□□□ 0.67
TPM4P67936 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
TPM4P67936 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC19.24■□□□□ 0.67
TPM4P67936 NORAD-201ENST00000565493 5339 ntBASIC19.24■□□□□ 0.67
TPM4P67936 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TPM4P67936 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.24■□□□□ 0.67
TPM4P67936 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TPM4P67936 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
TPM4P67936 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.24■□□□□ 0.67
TPM4P67936 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TPM4P67936 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.24■□□□□ 0.67
TPM4P67936 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.24■□□□□ 0.67
TPM4P67936 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.24■□□□□ 0.67
TPM4P67936 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TPM4P67936 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM4P67936 AC026691.1-201ENST00000602502 2017 ntBASIC19.24■□□□□ 0.67
TPM4P67936 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.23■□□□□ 0.67
TPM4P67936 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.23■□□□□ 0.67
TPM4P67936 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.23■□□□□ 0.67
TPM4P67936 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TPM4P67936 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.23■□□□□ 0.67
TPM4P67936 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.23■□□□□ 0.67
TPM4P67936 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms