Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 FAM185BP-201ENST00000443595 716 ntBASIC17.47■□□□□ 0.39
CDH4P55283 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.47■□□□□ 0.39
CDH4P55283 AC107918.2-201ENST00000530817 355 ntBASIC17.47■□□□□ 0.39
CDH4P55283 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH4P55283 DUX4L17-201ENST00000557360 1267 ntBASIC17.47■□□□□ 0.39
CDH4P55283 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.47■□□□□ 0.39
CDH4P55283 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.47■□□□□ 0.39
CDH4P55283 REXO1L3P-201ENST00000622202 1288 ntBASIC17.47■□□□□ 0.39
CDH4P55283 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CDH4P55283 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.47■□□□□ 0.39
CDH4P55283 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH4P55283 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH4P55283 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
CDH4P55283 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH4P55283 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CDH4P55283 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH4P55283 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.47■□□□□ 0.39
CDH4P55283 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH4P55283 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH4P55283 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH4P55283 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
CDH4P55283 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.46■□□□□ 0.39
CDH4P55283 AC108860.2-201ENST00000562760 2183 ntBASIC17.46■□□□□ 0.39
CDH4P55283 LETM1P2-201ENST00000597330 2178 ntBASIC17.46■□□□□ 0.39
CDH4P55283 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH4P55283 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH4P55283 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CDH4P55283 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH4P55283 RHOQP3-201ENST00000437982 621 ntBASIC17.46■□□□□ 0.39
CDH4P55283 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.46■□□□□ 0.39
CDH4P55283 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH4P55283 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.46■□□□□ 0.39
CDH4P55283 AC040169.1-201ENST00000565382 521 ntBASIC17.46■□□□□ 0.39
CDH4P55283 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH4P55283 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.46■□□□□ 0.39
CDH4P55283 AC010507.1-201ENST00000633895 436 ntBASIC17.46■□□□□ 0.39
CDH4P55283 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 AC092053.1-201ENST00000605787 1936 ntBASIC17.46■□□□□ 0.39
CDH4P55283 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH4P55283 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CDH4P55283 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CDH4P55283 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CDH4P55283 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CDH4P55283 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CDH4P55283 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.45■□□□□ 0.38
CDH4P55283 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CDH4P55283 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 AL021920.2-201ENST00000624828 1351 ntBASIC17.45■□□□□ 0.38
CDH4P55283 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH4P55283 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CDH4P55283 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.45■□□□□ 0.38
CDH4P55283 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
CDH4P55283 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.45■□□□□ 0.38
CDH4P55283 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH4P55283 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.45■□□□□ 0.38
CDH4P55283 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.45■□□□□ 0.38
CDH4P55283 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.45■□□□□ 0.38
CDH4P55283 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CDH4P55283 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
CDH4P55283 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH4P55283 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH4P55283 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH4P55283 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH4P55283 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH4P55283 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.44■□□□□ 0.38
CDH4P55283 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.44■□□□□ 0.38
CDH4P55283 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH4P55283 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CDH4P55283 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH4P55283 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.44■□□□□ 0.38
CDH4P55283 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH4P55283 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms