Protein–RNA interactions for Protein: P51532

SMARCA4, Transcription activator BRG1, humanhuman

Predictions only

Length 1,647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4P51532 RPS2P32-201ENST00000439199 892 ntBASIC30.18■■■□□ 2.42
SMARCA4P51532 MTND6P24-201ENST00000440466 518 ntBASIC30.18■■■□□ 2.42
SMARCA4P51532 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SMARCA4P51532 AL162274.1-201ENST00000617191 1098 ntBASIC30.18■■■□□ 2.42
SMARCA4P51532 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC30.18■■■□□ 2.42
SMARCA4P51532 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SMARCA4P51532 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SMARCA4P51532 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC30.18■■■□□ 2.42
SMARCA4P51532 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SMARCA4P51532 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
SMARCA4P51532 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SMARCA4P51532 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SMARCA4P51532 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SMARCA4P51532 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SMARCA4P51532 TNXA-203ENST00000507684 2038 ntBASIC30.18■■■□□ 2.42
SMARCA4P51532 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC30.18■■■□□ 2.42
SMARCA4P51532 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC30.18■■■□□ 2.42
SMARCA4P51532 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC30.18■■■□□ 2.42
SMARCA4P51532 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC30.18■■■□□ 2.42
SMARCA4P51532 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC30.18■■■□□ 2.42
SMARCA4P51532 AC112492.5-201ENST00000421897 457 ntBASIC30.18■■■□□ 2.42
SMARCA4P51532 TMEM14DP-201ENST00000422205 345 ntBASIC30.18■■■□□ 2.42
SMARCA4P51532 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SMARCA4P51532 AC135586.1-201ENST00000539323 574 ntBASIC30.18■■■□□ 2.42
SMARCA4P51532 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC30.18■■■□□ 2.42
SMARCA4P51532 AC106886.1-201ENST00000568660 600 ntBASIC30.18■■■□□ 2.42
SMARCA4P51532 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC30.18■■■□□ 2.42
SMARCA4P51532 FRMD8P1-201ENST00000440433 1524 ntBASIC30.18■■■□□ 2.42
SMARCA4P51532 BX323043.1-201ENST00000641006 1765 ntBASIC30.18■■■□□ 2.42
SMARCA4P51532 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMARCA4P51532 AC007541.1-201ENST00000570282 1469 ntBASIC30.17■■■□□ 2.42
SMARCA4P51532 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC30.17■■■□□ 2.42
SMARCA4P51532 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMARCA4P51532 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
SMARCA4P51532 SLC7A15P-201ENST00000424028 1363 ntBASIC30.17■■■□□ 2.42
SMARCA4P51532 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
SMARCA4P51532 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC30.17■■■□□ 2.42
SMARCA4P51532 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC30.17■■■□□ 2.42
SMARCA4P51532 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC30.17■■■□□ 2.42
SMARCA4P51532 AL589739.1-201ENST00000607720 493 ntBASIC30.17■■■□□ 2.42
SMARCA4P51532 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMARCA4P51532 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMARCA4P51532 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMARCA4P51532 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
SMARCA4P51532 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC30.16■■■□□ 2.42
SMARCA4P51532 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SMARCA4P51532 AL355312.1-201ENST00000407115 2176 ntBASIC30.16■■■□□ 2.42
SMARCA4P51532 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC30.16■■■□□ 2.42
SMARCA4P51532 RN7SL837P-201ENST00000463010 287 ntBASIC30.16■■■□□ 2.42
SMARCA4P51532 AC008494.3-201ENST00000606615 944 ntBASIC30.16■■■□□ 2.42
SMARCA4P51532 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
SMARCA4P51532 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
SMARCA4P51532 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SMARCA4P51532 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SMARCA4P51532 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SMARCA4P51532 SLC25A24-204ENST00000569674 2357 ntBASIC30.15■■■□□ 2.42
SMARCA4P51532 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SMARCA4P51532 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC30.15■■■□□ 2.42
SMARCA4P51532 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC30.15■■■□□ 2.42
SMARCA4P51532 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
SMARCA4P51532 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC30.15■■■□□ 2.42
SMARCA4P51532 MIR6805-201ENST00000615055 62 ntBASIC30.15■■■□□ 2.42
SMARCA4P51532 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
SMARCA4P51532 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SMARCA4P51532 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SMARCA4P51532 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC30.15■■■□□ 2.42
SMARCA4P51532 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC30.14■■■□□ 2.42
SMARCA4P51532 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC30.14■■■□□ 2.42
SMARCA4P51532 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC30.14■■■□□ 2.42
SMARCA4P51532 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC30.14■■■□□ 2.42
SMARCA4P51532 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC30.14■■■□□ 2.42
SMARCA4P51532 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC30.14■■■□□ 2.42
SMARCA4P51532 NME9-203ENST00000383180 2133 ntTSL 2 BASIC30.14■■■□□ 2.42
SMARCA4P51532 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC30.14■■■□□ 2.42
SMARCA4P51532 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC30.14■■■□□ 2.42
SMARCA4P51532 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC30.14■■■□□ 2.42
SMARCA4P51532 MXI1-205ENST00000393134 889 ntTSL 2 BASIC30.14■■■□□ 2.41
SMARCA4P51532 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC30.14■■■□□ 2.41
SMARCA4P51532 GNAQP1-201ENST00000444815 1067 ntBASIC30.14■■■□□ 2.41
SMARCA4P51532 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC30.14■■■□□ 2.41
SMARCA4P51532 AC105021.1-202ENST00000570572 669 ntBASIC30.14■■■□□ 2.41
SMARCA4P51532 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC30.14■■■□□ 2.41
SMARCA4P51532 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
SMARCA4P51532 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC30.14■■■□□ 2.41
SMARCA4P51532 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC30.14■■■□□ 2.41
SMARCA4P51532 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.41
SMARCA4P51532 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
SMARCA4P51532 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC30.13■■■□□ 2.41
SMARCA4P51532 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SMARCA4P51532 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SMARCA4P51532 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC30.13■■■□□ 2.41
SMARCA4P51532 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
SMARCA4P51532 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SMARCA4P51532 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
SMARCA4P51532 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC30.13■■■□□ 2.41
SMARCA4P51532 AC093004.1-201ENST00000508850 424 ntBASIC30.13■■■□□ 2.41
SMARCA4P51532 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC30.13■■■□□ 2.41
SMARCA4P51532 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
SMARCA4P51532 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
SMARCA4P51532 CHCHD2P3-201ENST00000603038 451 ntBASIC30.13■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms