Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CDX1P47902 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.06□□□□□ -0.16
CDX1P47902 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.06□□□□□ -0.16
CDX1P47902 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CDX1P47902 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC14.06□□□□□ -0.16
CDX1P47902 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC14.06□□□□□ -0.16
CDX1P47902 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC14.06□□□□□ -0.16
CDX1P47902 TSPY12P-201ENST00000421279 868 ntBASIC14.06□□□□□ -0.16
CDX1P47902 AL450487.1-201ENST00000426799 995 ntBASIC14.06□□□□□ -0.16
CDX1P47902 AC246785.2-201ENST00000432512 513 ntBASIC14.06□□□□□ -0.16
CDX1P47902 DUSP5P1-201ENST00000441325 1139 ntBASIC14.06□□□□□ -0.16
CDX1P47902 TOB2P1-201ENST00000469761 992 ntBASIC14.06□□□□□ -0.16
CDX1P47902 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC14.06□□□□□ -0.16
CDX1P47902 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.06□□□□□ -0.16
CDX1P47902 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC14.06□□□□□ -0.16
CDX1P47902 PRELID1P1-202ENST00000567272 903 ntBASIC14.06□□□□□ -0.16
CDX1P47902 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.06□□□□□ -0.16
CDX1P47902 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.06□□□□□ -0.16
CDX1P47902 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.06□□□□□ -0.16
CDX1P47902 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC14.06□□□□□ -0.16
CDX1P47902 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CDX1P47902 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
CDX1P47902 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.06□□□□□ -0.16
CDX1P47902 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.06□□□□□ -0.16
CDX1P47902 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 C8orf49-201ENST00000525043 1968 ntBASIC14.05□□□□□ -0.16
CDX1P47902 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.05□□□□□ -0.16
CDX1P47902 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CDX1P47902 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 GMCL1P1-201ENST00000463439 1581 ntBASIC14.05□□□□□ -0.16
CDX1P47902 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CDX1P47902 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.05□□□□□ -0.16
CDX1P47902 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.05□□□□□ -0.16
CDX1P47902 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.05□□□□□ -0.16
CDX1P47902 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
CDX1P47902 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 AC104819.1-201ENST00000504587 486 ntBASIC14.05□□□□□ -0.16
CDX1P47902 AP000867.3-201ENST00000524675 377 ntBASIC14.05□□□□□ -0.16
CDX1P47902 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 AC011840.4-201ENST00000578471 627 ntBASIC14.05□□□□□ -0.16
CDX1P47902 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC14.05□□□□□ -0.16
CDX1P47902 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 FLYWCH1P1-201ENST00000460917 1874 ntBASIC14.05□□□□□ -0.16
CDX1P47902 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC14.05□□□□□ -0.16
CDX1P47902 AC233702.3-201ENST00000578656 1387 ntBASIC14.05□□□□□ -0.16
CDX1P47902 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC14.05□□□□□ -0.16
CDX1P47902 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
CDX1P47902 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDX1P47902 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CDX1P47902 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CDX1P47902 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.04□□□□□ -0.16
CDX1P47902 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CDX1P47902 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms