Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.28■□□□□ 0.2
RORAP35398 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
RORAP35398 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.28■□□□□ 0.2
RORAP35398 RHOQP3-201ENST00000437982 621 ntBASIC16.28■□□□□ 0.2
RORAP35398 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.28■□□□□ 0.2
RORAP35398 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.28■□□□□ 0.2
RORAP35398 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
RORAP35398 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
RORAP35398 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.28■□□□□ 0.2
RORAP35398 AC134684.3-201ENST00000641758 218 ntBASIC16.28■□□□□ 0.2
RORAP35398 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 PRORSD1P-202ENST00000563365 2154 ntBASIC16.28■□□□□ 0.2
RORAP35398 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RORAP35398 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
RORAP35398 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.28■□□□□ 0.2
RORAP35398 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
RORAP35398 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
RORAP35398 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
RORAP35398 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
RORAP35398 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.27■□□□□ 0.2
RORAP35398 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
RORAP35398 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
RORAP35398 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.27■□□□□ 0.2
RORAP35398 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.27■□□□□ 0.2
RORAP35398 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.27■□□□□ 0.2
RORAP35398 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
RORAP35398 PAWRP1-201ENST00000451083 565 ntBASIC16.27■□□□□ 0.2
RORAP35398 YBX1P5-201ENST00000509441 847 ntBASIC16.27■□□□□ 0.2
RORAP35398 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.27■□□□□ 0.2
RORAP35398 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.27■□□□□ 0.2
RORAP35398 AP001160.2-201ENST00000596071 487 ntBASIC16.27■□□□□ 0.2
RORAP35398 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.27■□□□□ 0.2
RORAP35398 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.27■□□□□ 0.2
RORAP35398 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RORAP35398 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RORAP35398 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RORAP35398 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RORAP35398 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RORAP35398 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.27■□□□□ 0.19
RORAP35398 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.27■□□□□ 0.19
RORAP35398 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RORAP35398 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.27■□□□□ 0.19
RORAP35398 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.27■□□□□ 0.19
RORAP35398 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.27■□□□□ 0.19
RORAP35398 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.27■□□□□ 0.19
RORAP35398 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RORAP35398 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.27■□□□□ 0.19
RORAP35398 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
RORAP35398 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.26■□□□□ 0.19
RORAP35398 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.26■□□□□ 0.19
RORAP35398 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.26■□□□□ 0.19
RORAP35398 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.26■□□□□ 0.19
RORAP35398 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 ALG1L5P-201ENST00000482043 771 ntBASIC16.26■□□□□ 0.19
RORAP35398 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.26■□□□□ 0.19
RORAP35398 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.26■□□□□ 0.19
RORAP35398 PDPK2P-202ENST00000562415 1191 ntBASIC16.26■□□□□ 0.19
RORAP35398 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.26■□□□□ 0.19
RORAP35398 AC004877.2-201ENST00000623941 599 ntBASIC16.26■□□□□ 0.19
RORAP35398 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RORAP35398 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms