Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.3■□□□□ 0.2
PROM1O43490 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.3■□□□□ 0.2
PROM1O43490 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.3■□□□□ 0.2
PROM1O43490 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
PROM1O43490 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PROM1O43490 MTDHP4-201ENST00000600287 670 ntBASIC16.3■□□□□ 0.2
PROM1O43490 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.3■□□□□ 0.2
PROM1O43490 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.3■□□□□ 0.2
PROM1O43490 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.3■□□□□ 0.2
PROM1O43490 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PROM1O43490 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PROM1O43490 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.3■□□□□ 0.2
PROM1O43490 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.3■□□□□ 0.2
PROM1O43490 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
PROM1O43490 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.29■□□□□ 0.2
PROM1O43490 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.29■□□□□ 0.2
PROM1O43490 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PROM1O43490 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
PROM1O43490 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.29■□□□□ 0.2
PROM1O43490 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PROM1O43490 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PROM1O43490 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.29■□□□□ 0.2
PROM1O43490 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PROM1O43490 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PROM1O43490 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.29■□□□□ 0.2
PROM1O43490 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.29■□□□□ 0.2
PROM1O43490 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PROM1O43490 AL589182.2-201ENST00000619332 1049 ntBASIC16.29■□□□□ 0.2
PROM1O43490 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PROM1O43490 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PROM1O43490 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PROM1O43490 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PROM1O43490 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.29■□□□□ 0.2
PROM1O43490 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PROM1O43490 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 NCF1C-201ENST00000438382 1427 ntBASIC16.28■□□□□ 0.2
PROM1O43490 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PROM1O43490 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PROM1O43490 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
PROM1O43490 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PROM1O43490 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.28■□□□□ 0.2
PROM1O43490 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.28■□□□□ 0.2
PROM1O43490 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PROM1O43490 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.28■□□□□ 0.2
PROM1O43490 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.28■□□□□ 0.2
PROM1O43490 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.28■□□□□ 0.2
PROM1O43490 AC021087.4-201ENST00000563761 564 ntBASIC16.28■□□□□ 0.2
PROM1O43490 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.28■□□□□ 0.2
PROM1O43490 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.28■□□□□ 0.2
PROM1O43490 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
PROM1O43490 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.28■□□□□ 0.2
PROM1O43490 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
PROM1O43490 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PROM1O43490 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms