Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC093525.9-201ENST00000624961 1746 ntBASIC17.36■□□□□ 0.37
HOXC11O43248 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
HOXC11O43248 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.36■□□□□ 0.37
HOXC11O43248 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 HCG4-201ENST00000418983 998 ntBASIC17.36■□□□□ 0.37
HOXC11O43248 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.36■□□□□ 0.37
HOXC11O43248 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.36■□□□□ 0.37
HOXC11O43248 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.36■□□□□ 0.37
HOXC11O43248 HLA-J-203ENST00000494367 1087 ntBASIC17.36■□□□□ 0.37
HOXC11O43248 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.36■□□□□ 0.37
HOXC11O43248 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.36■□□□□ 0.37
HOXC11O43248 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.36■□□□□ 0.37
HOXC11O43248 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HOXC11O43248 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.36■□□□□ 0.37
HOXC11O43248 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.36■□□□□ 0.37
HOXC11O43248 AC091167.2-201ENST00000579581 588 ntBASIC17.36■□□□□ 0.37
HOXC11O43248 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.36■□□□□ 0.37
HOXC11O43248 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.36■□□□□ 0.37
HOXC11O43248 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
HOXC11O43248 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
HOXC11O43248 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
HOXC11O43248 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HOXC11O43248 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HOXC11O43248 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 AC116353.5-201ENST00000638148 1699 ntBASIC17.36■□□□□ 0.37
HOXC11O43248 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC11O43248 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
HOXC11O43248 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.35■□□□□ 0.37
HOXC11O43248 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.35■□□□□ 0.37
HOXC11O43248 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC11O43248 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HOXC11O43248 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC11O43248 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.35■□□□□ 0.37
HOXC11O43248 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC11O43248 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.35■□□□□ 0.37
HOXC11O43248 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.35■□□□□ 0.37
HOXC11O43248 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.35■□□□□ 0.37
HOXC11O43248 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
HOXC11O43248 RN7SL589P-201ENST00000481268 310 ntBASIC17.35■□□□□ 0.37
HOXC11O43248 KRT8P48-201ENST00000515599 1220 ntBASIC17.35■□□□□ 0.37
HOXC11O43248 AC109635.5-201ENST00000533593 962 ntBASIC17.35■□□□□ 0.37
HOXC11O43248 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.35■□□□□ 0.37
HOXC11O43248 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.35■□□□□ 0.37
HOXC11O43248 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.35■□□□□ 0.37
HOXC11O43248 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.35■□□□□ 0.37
HOXC11O43248 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC11O43248 TOP3BP1-201ENST00000420768 1380 ntBASIC17.35■□□□□ 0.37
HOXC11O43248 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.35■□□□□ 0.37
HOXC11O43248 AL139384.1-201ENST00000612143 3047 ntBASIC17.35■□□□□ 0.37
HOXC11O43248 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC11O43248 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.35■□□□□ 0.37
HOXC11O43248 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC11O43248 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC11O43248 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HOXC11O43248 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
HOXC11O43248 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
HOXC11O43248 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.34■□□□□ 0.37
HOXC11O43248 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.34■□□□□ 0.37
HOXC11O43248 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.34■□□□□ 0.37
HOXC11O43248 AL627223.1-201ENST00000416693 442 ntBASIC17.34■□□□□ 0.37
HOXC11O43248 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.34■□□□□ 0.37
HOXC11O43248 AKAP8P1-201ENST00000434743 1349 ntBASIC17.34■□□□□ 0.37
HOXC11O43248 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HOXC11O43248 SPDYE11-202ENST00000450699 704 ntBASIC17.34■□□□□ 0.37
HOXC11O43248 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.34■□□□□ 0.37
HOXC11O43248 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 DUX4L17-201ENST00000557360 1267 ntBASIC17.34■□□□□ 0.37
HOXC11O43248 AC093520.2-201ENST00000561830 333 ntBASIC17.34■□□□□ 0.37
HOXC11O43248 RARRES2P8-201ENST00000566335 367 ntBASIC17.34■□□□□ 0.37
HOXC11O43248 SPDYE9P-201ENST00000570642 692 ntBASIC17.34■□□□□ 0.37
HOXC11O43248 AL009183.1-201ENST00000603760 355 ntBASIC17.34■□□□□ 0.37
HOXC11O43248 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
HOXC11O43248 SPDYE10P-202ENST00000612005 668 ntBASIC17.34■□□□□ 0.37
HOXC11O43248 SPDYE8P-202ENST00000612377 668 ntBASIC17.34■□□□□ 0.37
HOXC11O43248 AL161645.1-201ENST00000622716 1255 ntBASIC17.34■□□□□ 0.37
HOXC11O43248 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HOXC11O43248 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms