Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH5O43196 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 AC012321.1-201ENST00000561622 1588 ntBASIC23.6■■□□□ 1.37
MSH5O43196 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
MSH5O43196 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 AL109659.2-201ENST00000606809 1674 ntBASIC23.6■■□□□ 1.37
MSH5O43196 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH5O43196 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
MSH5O43196 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH5O43196 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH5O43196 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 UBALD1-205ENST00000590891 2641 ntBASIC23.6■■□□□ 1.37
MSH5O43196 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH5O43196 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
MSH5O43196 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
MSH5O43196 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
MSH5O43196 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
MSH5O43196 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
MSH5O43196 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC23.59■■□□□ 1.37
MSH5O43196 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC23.59■■□□□ 1.37
MSH5O43196 HIST2H3DP1-201ENST00000401004 416 ntBASIC23.59■■□□□ 1.37
MSH5O43196 AL513475.2-201ENST00000402316 392 ntBASIC23.59■■□□□ 1.37
MSH5O43196 PMS2P2-201ENST00000425039 1128 ntBASIC23.59■■□□□ 1.37
MSH5O43196 THAP5-204ENST00000438865 868 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH5O43196 AL162253.1-201ENST00000443792 758 ntTSL 3 BASIC23.59■■□□□ 1.37
MSH5O43196 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
MSH5O43196 AC122713.1-201ENST00000518368 1015 ntBASIC23.59■■□□□ 1.37
MSH5O43196 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC23.59■■□□□ 1.37
MSH5O43196 AC022784.5-201ENST00000522241 437 ntBASIC23.59■■□□□ 1.37
MSH5O43196 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC23.59■■□□□ 1.37
MSH5O43196 AC027796.2-201ENST00000575326 344 ntBASIC23.59■■□□□ 1.37
MSH5O43196 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC23.59■■□□□ 1.37
MSH5O43196 AL139022.2-201ENST00000606934 443 ntBASIC23.59■■□□□ 1.37
MSH5O43196 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
MSH5O43196 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH5O43196 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
MSH5O43196 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
MSH5O43196 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
MSH5O43196 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH5O43196 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
MSH5O43196 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
MSH5O43196 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
MSH5O43196 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
MSH5O43196 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC23.58■■□□□ 1.37
MSH5O43196 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC23.58■■□□□ 1.37
MSH5O43196 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
MSH5O43196 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
MSH5O43196 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC23.58■■□□□ 1.37
MSH5O43196 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC23.58■■□□□ 1.37
MSH5O43196 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC23.58■■□□□ 1.37
MSH5O43196 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC23.58■■□□□ 1.37
MSH5O43196 AC124947.1-201ENST00000552835 814 ntTSL 3 BASIC23.58■■□□□ 1.37
MSH5O43196 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC23.58■■□□□ 1.37
MSH5O43196 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC23.58■■□□□ 1.37
MSH5O43196 AC116407.3-201ENST00000623905 1129 ntBASIC23.58■■□□□ 1.37
MSH5O43196 LINC02246-207ENST00000630354 524 ntTSL 5 BASIC23.58■■□□□ 1.37
MSH5O43196 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH5O43196 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC23.58■■□□□ 1.37
MSH5O43196 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
MSH5O43196 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
MSH5O43196 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC23.58■■□□□ 1.36
MSH5O43196 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
MSH5O43196 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.36
MSH5O43196 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
MSH5O43196 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
MSH5O43196 AC022898.2-201ENST00000616822 1312 ntBASIC23.58■■□□□ 1.36
MSH5O43196 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
MSH5O43196 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC23.57■■□□□ 1.36
MSH5O43196 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
MSH5O43196 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC23.57■■□□□ 1.36
MSH5O43196 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC23.57■■□□□ 1.36
MSH5O43196 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC23.57■■□□□ 1.36
MSH5O43196 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC23.57■■□□□ 1.36
MSH5O43196 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC23.57■■□□□ 1.36
MSH5O43196 AC092447.3-201ENST00000426027 686 ntBASIC23.57■■□□□ 1.36
MSH5O43196 AC092164.1-203ENST00000444501 723 ntTSL 3 BASIC23.57■■□□□ 1.36
MSH5O43196 AC018712.1-201ENST00000455767 687 ntBASIC23.57■■□□□ 1.36
MSH5O43196 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms