Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 RN7SL510P-201ENST00000581311 263 ntBASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 AC073648.2-201ENST00000510116 352 ntBASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 AL121912.1-201ENST00000603683 238 ntBASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 AC009053.2-201ENST00000563701 2365 ntBASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
AP4E1Q9UPM8 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 AC005915.1-201ENST00000624912 2018 ntBASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 KRT126P-201ENST00000549467 1181 ntBASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 AC004706.3-202ENST00000621574 984 ntBASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 AL691432.3-201ENST00000621860 400 ntBASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.79■□□□□ 0.44
AP4E1Q9UPM8 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 AC004870.1-201ENST00000315132 882 ntBASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 LAGE3P1-201ENST00000425356 484 ntBASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 AC079781.3-201ENST00000449110 356 ntBASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 AC107918.4-202ENST00000641623 219 ntBASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
AP4E1Q9UPM8 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms