Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 LINC01451-201ENST00000623792 534 ntBASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 HNRNPRP1-201ENST00000453465 1695 ntBASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 AL390961.4-201ENST00000623958 2535 ntBASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 CU639417.3-201ENST00000624240 1404 ntBASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 AC069120.2-201ENST00000524091 540 ntBASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 AC107918.2-201ENST00000530817 355 ntBASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
SHROOM4Q9ULL8 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM4Q9ULL8 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
SHROOM4Q9ULL8 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC32.33■■■□□ 2.77
SHROOM4Q9ULL8 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
SHROOM4Q9ULL8 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC32.33■■■□□ 2.77
SHROOM4Q9ULL8 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
SHROOM4Q9ULL8 PIN1P1-201ENST00000412108 996 ntBASIC32.33■■■□□ 2.77
SHROOM4Q9ULL8 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
SHROOM4Q9ULL8 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC32.33■■■□□ 2.77
SHROOM4Q9ULL8 AL645728.2-201ENST00000641974 660 ntBASIC32.33■■■□□ 2.77
SHROOM4Q9ULL8 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
SHROOM4Q9ULL8 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC32.33■■■□□ 2.77
SHROOM4Q9ULL8 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC32.32■■■□□ 2.76
SHROOM4Q9ULL8 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
SHROOM4Q9ULL8 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC32.32■■■□□ 2.76
SHROOM4Q9ULL8 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
SHROOM4Q9ULL8 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC32.32■■■□□ 2.76
SHROOM4Q9ULL8 AC008764.6-201ENST00000595909 2069 ntBASIC32.32■■■□□ 2.76
SHROOM4Q9ULL8 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC32.32■■■□□ 2.76
SHROOM4Q9ULL8 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 GATD1-206ENST00000526325 756 ntTSL 5 BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
SHROOM4Q9ULL8 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 SPCS2P4-201ENST00000436160 681 ntBASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 KRT8P23-201ENST00000560090 1207 ntBASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 AC026150.2-201ENST00000564693 1156 ntBASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM4Q9ULL8 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC32.29■■■□□ 2.76
SHROOM4Q9ULL8 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC32.29■■■□□ 2.76
SHROOM4Q9ULL8 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC32.29■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms