Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 AL627223.1-201ENST00000416693 442 ntBASIC17.57■□□□□ 0.4
TDP1Q9NUW8 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 RN7SL589P-201ENST00000481268 310 ntBASIC17.57■□□□□ 0.4
TDP1Q9NUW8 AC109322.1-201ENST00000524499 1264 ntBASIC17.57■□□□□ 0.4
TDP1Q9NUW8 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 AL161645.1-201ENST00000622716 1255 ntBASIC17.57■□□□□ 0.4
TDP1Q9NUW8 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 LINC00628-201ENST00000628516 1289 ntBASIC17.57■□□□□ 0.4
TDP1Q9NUW8 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 AL353732.1-201ENST00000569618 1459 ntBASIC17.56■□□□□ 0.4
TDP1Q9NUW8 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 AKAP8P1-201ENST00000434743 1349 ntBASIC17.56■□□□□ 0.4
TDP1Q9NUW8 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 MIR770-201ENST00000390219 98 ntBASIC17.56■□□□□ 0.4
TDP1Q9NUW8 TFAMP1-201ENST00000412727 736 ntBASIC17.56■□□□□ 0.4
TDP1Q9NUW8 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 AC005237.2-201ENST00000434368 219 ntBASIC17.56■□□□□ 0.4
TDP1Q9NUW8 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 AC093520.2-201ENST00000561830 333 ntBASIC17.56■□□□□ 0.4
TDP1Q9NUW8 RARRES2P8-201ENST00000566335 367 ntBASIC17.56■□□□□ 0.4
TDP1Q9NUW8 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 LINC02084-201ENST00000606069 1096 ntBASIC17.56■□□□□ 0.4
TDP1Q9NUW8 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TDP1Q9NUW8 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 AC093525.9-201ENST00000624961 1746 ntBASIC17.55■□□□□ 0.4
TDP1Q9NUW8 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 AL592309.1-201ENST00000443127 649 ntBASIC17.55■□□□□ 0.4
TDP1Q9NUW8 AC079140.1-201ENST00000508039 487 ntBASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms