Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 RPS15P9-201ENST00000494093 319 ntBASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 RNA5SP415-201ENST00000517246 115 ntBASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 AL805961.1-202ENST00000641562 540 ntBASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 AP002414.1-201ENST00000391405 1147 ntBASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 AL022342.1-201ENST00000400363 863 ntBASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 UNC93B6-202ENST00000528242 690 ntBASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 AC145285.3-201ENST00000564603 959 ntBASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM39Q9HCM9 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM39Q9HCM9 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.02■□□□□ 0.31
TRIM39Q9HCM9 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.02■□□□□ 0.31
TRIM39Q9HCM9 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.02■□□□□ 0.31
TRIM39Q9HCM9 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM39Q9HCM9 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.02■□□□□ 0.31
TRIM39Q9HCM9 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM39Q9HCM9 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM39Q9HCM9 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM39Q9HCM9 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM39Q9HCM9 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 AC008667.4-201ENST00000607370 168 ntBASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 AF228730.7-201ENST00000641842 219 ntBASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
TRIM39Q9HCM9 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms