Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 KRT18P27-201ENST00000427733 1299 ntBASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 AC006557.2-201ENST00000592985 1240 ntBASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 AL121912.1-201ENST00000603683 238 ntBASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
CCSER1Q9C0I3 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 AC006504.4-201ENST00000592118 1568 ntBASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 PTCHD3P3-201ENST00000403073 906 ntBASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 ELK2BP-201ENST00000415014 1224 ntBASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 AC018712.1-201ENST00000455767 687 ntBASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 RNPS1P1-201ENST00000507437 918 ntBASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 AL121894.2-201ENST00000602977 491 ntBASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 AL805961.1-202ENST00000641562 540 ntBASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 AF228730.7-201ENST00000641842 219 ntBASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 AL021920.2-201ENST00000624828 1351 ntBASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 AL645728.1-201ENST00000366221 2101 ntBASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CCSER1Q9C0I3 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCSER1Q9C0I3 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCSER1Q9C0I3 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CCSER1Q9C0I3 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCSER1Q9C0I3 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.66
CCSER1Q9C0I3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCSER1Q9C0I3 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 AC004870.1-201ENST00000315132 882 ntBASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 RPS2P1-201ENST00000434010 821 ntBASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 AC073648.2-201ENST00000510116 352 ntBASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 AP002490.2-201ENST00000524791 560 ntBASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 KRT8P49-201ENST00000604166 1432 ntBASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCSER1Q9C0I3 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms