Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 MIR662-201ENST00000384847 95 ntBASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 TSPY15P-201ENST00000457163 923 ntBASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 ZNF444P1-201ENST00000559497 298 ntBASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 FRMD8P1-201ENST00000440433 1524 ntBASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28BQ9BUN5 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 AC007967.3-201ENST00000434308 558 ntBASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 AP002490.2-201ENST00000524791 560 ntBASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 AL031432.5-201ENST00000641059 760 ntBASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28BQ9BUN5 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 STARP1-201ENST00000397973 869 ntBASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 SPDYE15P-201ENST00000424157 909 ntBASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 AC122714.2-201ENST00000502787 707 ntBASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 AC111152.3-201ENST00000569699 673 ntBASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 LINC01568-207ENST00000641790 1380 ntBASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms