Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.04■□□□□ -0
NKX3-1Q99801 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.04■□□□□ -0
NKX3-1Q99801 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.04■□□□□ -0
NKX3-1Q99801 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
NKX3-1Q99801 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC15.03■□□□□ -0
NKX3-1Q99801 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 STARP1-201ENST00000397973 869 ntBASIC15.03■□□□□ -0
NKX3-1Q99801 AC005332.3-201ENST00000589904 676 ntBASIC15.03■□□□□ -0
NKX3-1Q99801 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC15.03■□□□□ -0
NKX3-1Q99801 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.03■□□□□ -0
NKX3-1Q99801 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.03■□□□□ -0
NKX3-1Q99801 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.03■□□□□ -0
NKX3-1Q99801 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.03■□□□□ -0
NKX3-1Q99801 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
NKX3-1Q99801 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.03■□□□□ -0
NKX3-1Q99801 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.03■□□□□ -0
NKX3-1Q99801 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
NKX3-1Q99801 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
NKX3-1Q99801 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.03■□□□□ -0
NKX3-1Q99801 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
NKX3-1Q99801 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
NKX3-1Q99801 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
NKX3-1Q99801 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
NKX3-1Q99801 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC15.02■□□□□ -0
NKX3-1Q99801 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC15.02■□□□□ -0
NKX3-1Q99801 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.02■□□□□ -0
NKX3-1Q99801 AC092364.2-201ENST00000596710 2692 ntBASIC15.02■□□□□ -0
NKX3-1Q99801 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
NKX3-1Q99801 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
NKX3-1Q99801 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.02■□□□□ -0
NKX3-1Q99801 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.02■□□□□ -0
NKX3-1Q99801 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.02■□□□□ -0
NKX3-1Q99801 UBC-206ENST00000538617 1303 ntTSL 5 BASIC15.02■□□□□ -0
NKX3-1Q99801 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
NKX3-1Q99801 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
NKX3-1Q99801 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
NKX3-1Q99801 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC15.02■□□□□ -0
NKX3-1Q99801 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC15.02■□□□□ -0
NKX3-1Q99801 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC15.02■□□□□ -0
NKX3-1Q99801 AC063952.2-201ENST00000498792 1227 ntBASIC15.02■□□□□ -0
NKX3-1Q99801 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC15.02■□□□□ -0
NKX3-1Q99801 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC15.02■□□□□ -0
NKX3-1Q99801 GPR32P1-201ENST00000601788 811 ntBASIC15.02■□□□□ -0
NKX3-1Q99801 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC15.02■□□□□ -0
NKX3-1Q99801 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
NKX3-1Q99801 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
NKX3-1Q99801 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
NKX3-1Q99801 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.02□□□□□ -0.01
NKX3-1Q99801 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
NKX3-1Q99801 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
NKX3-1Q99801 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
NKX3-1Q99801 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
NKX3-1Q99801 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.02□□□□□ -0.01
NKX3-1Q99801 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
NKX3-1Q99801 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
NKX3-1Q99801 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC15.02□□□□□ -0.01
NKX3-1Q99801 Z83836.1-201ENST00000624605 1642 ntBASIC15.02□□□□□ -0.01
NKX3-1Q99801 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
NKX3-1Q99801 PKD1P5-201ENST00000532415 10291 ntBASIC15.02□□□□□ -0.01
NKX3-1Q99801 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
NKX3-1Q99801 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms