Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RTL3Q8N8U3 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 AC060834.1-201ENST00000443027 2032 ntBASIC17.57■□□□□ 0.4
RTL3Q8N8U3 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 IGHV3-22-201ENST00000520721 359 ntBASIC17.57■□□□□ 0.4
RTL3Q8N8U3 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 GGTLC5P-201ENST00000617623 998 ntBASIC17.57■□□□□ 0.4
RTL3Q8N8U3 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.57■□□□□ 0.4
RTL3Q8N8U3 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTL3Q8N8U3 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTL3Q8N8U3 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 DUX4L17-201ENST00000557360 1267 ntBASIC17.55■□□□□ 0.4
RTL3Q8N8U3 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RTL3Q8N8U3 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms