Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 AC004835.2-201ENST00000603762 682 ntBASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 AL096865.1-201ENST00000606796 927 ntBASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDDC3Q8N4P3 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 ACTL9-202ENST00000612068 1252 ntBASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 AC129492.6-201ENST00000611383 1305 ntBASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDDC3Q8N4P3 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 BCRP1-201ENST00000444246 691 ntBASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 AC008764.6-201ENST00000595909 2069 ntBASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDDC3Q8N4P3 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms