Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 AC004817.3-201ENST00000602957 2129 ntBASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 AC007292.2-201ENST00000593524 1812 ntBASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 MTMR9LP-203ENST00000426597 1545 ntBASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 AC090192.1-201ENST00000517740 490 ntBASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 AC124283.5-201ENST00000624661 1809 ntBASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CCDC28AQ8IWP9 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 AC005840.4-201ENST00000541242 2494 ntBASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 MAP2K4P1-201ENST00000438453 1195 ntBASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms