Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 TAF8-206ENST00000472818 719 ntTSL 2 BASIC22.53■■□□□ 1.2
USP54Q70EL1 SERBP1P5-201ENST00000510079 1181 ntBASIC22.53■■□□□ 1.2
USP54Q70EL1 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC22.53■■□□□ 1.2
USP54Q70EL1 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC22.53■■□□□ 1.2
USP54Q70EL1 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
USP54Q70EL1 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
USP54Q70EL1 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
USP54Q70EL1 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC22.53■■□□□ 1.2
USP54Q70EL1 LINC02012-201ENST00000608206 1725 ntBASIC22.53■■□□□ 1.2
USP54Q70EL1 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.52■■□□□ 1.2
USP54Q70EL1 AL390961.4-201ENST00000623958 2535 ntBASIC22.52■■□□□ 1.2
USP54Q70EL1 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC22.52■■□□□ 1.2
USP54Q70EL1 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
USP54Q70EL1 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC22.52■■□□□ 1.2
USP54Q70EL1 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP54Q70EL1 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC22.52■■□□□ 1.2
USP54Q70EL1 AL590560.3-201ENST00000623350 461 ntBASIC22.52■■□□□ 1.2
USP54Q70EL1 AL035252.4-201ENST00000624174 288 ntBASIC22.52■■□□□ 1.2
USP54Q70EL1 AC004840.1-201ENST00000636359 365 ntBASIC22.52■■□□□ 1.2
USP54Q70EL1 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC22.52■■□□□ 1.2
USP54Q70EL1 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC22.52■■□□□ 1.2
USP54Q70EL1 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP54Q70EL1 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP54Q70EL1 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP54Q70EL1 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP54Q70EL1 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC22.52■■□□□ 1.2
USP54Q70EL1 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC22.52■■□□□ 1.2
USP54Q70EL1 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP54Q70EL1 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC22.52■■□□□ 1.2
USP54Q70EL1 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC22.52■■□□□ 1.2
USP54Q70EL1 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
USP54Q70EL1 KRT18P34-201ENST00000488218 1270 ntBASIC22.52■■□□□ 1.2
USP54Q70EL1 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP54Q70EL1 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC22.52■■□□□ 1.2
USP54Q70EL1 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC22.52■■□□□ 1.2
USP54Q70EL1 COQ9-214ENST00000567933 882 ntTSL 3 BASIC22.52■■□□□ 1.2
USP54Q70EL1 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC22.52■■□□□ 1.2
USP54Q70EL1 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC22.52■■□□□ 1.2
USP54Q70EL1 TEX28P1-201ENST00000613479 1221 ntBASIC22.52■■□□□ 1.2
USP54Q70EL1 TEX28P2-201ENST00000617764 1221 ntBASIC22.52■■□□□ 1.2
USP54Q70EL1 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP54Q70EL1 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC22.51■■□□□ 1.19
USP54Q70EL1 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP54Q70EL1 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP54Q70EL1 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC22.51■■□□□ 1.19
USP54Q70EL1 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP54Q70EL1 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC22.51■■□□□ 1.19
USP54Q70EL1 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP54Q70EL1 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP54Q70EL1 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP54Q70EL1 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
USP54Q70EL1 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC22.51■■□□□ 1.19
USP54Q70EL1 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC22.51■■□□□ 1.19
USP54Q70EL1 ZNF890P-202ENST00000530367 1156 ntBASIC22.51■■□□□ 1.19
USP54Q70EL1 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP54Q70EL1 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP54Q70EL1 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP54Q70EL1 AC073439.1-201ENST00000624121 1774 ntBASIC22.51■■□□□ 1.19
USP54Q70EL1 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 AC087289.5-201ENST00000586076 3175 ntBASIC22.5■■□□□ 1.19
USP54Q70EL1 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC22.5■■□□□ 1.19
USP54Q70EL1 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
USP54Q70EL1 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
USP54Q70EL1 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC22.5■■□□□ 1.19
USP54Q70EL1 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC22.5■■□□□ 1.19
USP54Q70EL1 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC22.5■■□□□ 1.19
USP54Q70EL1 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC22.5■■□□□ 1.19
USP54Q70EL1 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC22.5■■□□□ 1.19
USP54Q70EL1 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
USP54Q70EL1 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP54Q70EL1 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
USP54Q70EL1 CD276-201ENST00000318424 2738 ntTSL 5 BASIC22.49■■□□□ 1.19
USP54Q70EL1 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC22.49■■□□□ 1.19
USP54Q70EL1 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC22.49■■□□□ 1.19
USP54Q70EL1 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
USP54Q70EL1 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC22.49■■□□□ 1.19
USP54Q70EL1 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP54Q70EL1 WDR53-204ENST00000433160 887 ntTSL 5 BASIC22.49■■□□□ 1.19
USP54Q70EL1 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
USP54Q70EL1 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC22.49■■□□□ 1.19
USP54Q70EL1 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC22.49■■□□□ 1.19
USP54Q70EL1 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC22.49■■□□□ 1.19
USP54Q70EL1 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC22.49■■□□□ 1.19
USP54Q70EL1 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC22.49■■□□□ 1.19
USP54Q70EL1 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP54Q70EL1 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC22.49■■□□□ 1.19
USP54Q70EL1 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP54Q70EL1 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
USP54Q70EL1 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC22.49■■□□□ 1.19
USP54Q70EL1 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms