Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 SIGLEC16-201ENST00000599858 1437 ntBASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 HNRNPDP1-201ENST00000439535 754 ntBASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 MIR7706-201ENST00000613747 67 ntBASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 BX640515.1-201ENST00000617215 977 ntBASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 AC073592.4-201ENST00000623827 446 ntBASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 AC079776.2-201ENST00000641154 1609 ntBASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 AC092053.1-201ENST00000605787 1936 ntBASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 IL9RP2-201ENST00000423948 1312 ntBASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 AC021087.4-201ENST00000563761 564 ntBASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.79■□□□□ 0.28
PTCHD3Q3KNS1 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 AC243591.1-201ENST00000452967 1364 ntBASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 AL356309.3-201ENST00000624132 1934 ntBASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 AL121761.2-201ENST00000598007 1648 ntBASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 EGFEM1P-202ENST00000431685 1563 ntBASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 AC093909.1-201ENST00000504731 1122 ntBASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 SLC25A1P1-201ENST00000528351 927 ntBASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms