Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.85■□□□□ 0.77
SF3A1Q15459 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.85■□□□□ 0.77
SF3A1Q15459 IGHV3-47-201ENST00000425060 335 ntBASIC19.85■□□□□ 0.77
SF3A1Q15459 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SF3A1Q15459 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.85■□□□□ 0.77
SF3A1Q15459 KRT18P35-201ENST00000510488 1269 ntBASIC19.85■□□□□ 0.77
SF3A1Q15459 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.85■□□□□ 0.77
SF3A1Q15459 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.85■□□□□ 0.77
SF3A1Q15459 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.85■□□□□ 0.77
SF3A1Q15459 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.85■□□□□ 0.77
SF3A1Q15459 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
SF3A1Q15459 AL358472.4-201ENST00000633140 710 ntBASIC19.85■□□□□ 0.77
SF3A1Q15459 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
SF3A1Q15459 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.85■□□□□ 0.77
SF3A1Q15459 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.85■□□□□ 0.77
SF3A1Q15459 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
SF3A1Q15459 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.85■□□□□ 0.77
SF3A1Q15459 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.85■□□□□ 0.77
SF3A1Q15459 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.85■□□□□ 0.77
SF3A1Q15459 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SF3A1Q15459 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SF3A1Q15459 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SF3A1Q15459 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.84■□□□□ 0.77
SF3A1Q15459 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
SF3A1Q15459 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.84■□□□□ 0.77
SF3A1Q15459 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.84■□□□□ 0.77
SF3A1Q15459 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.84■□□□□ 0.77
SF3A1Q15459 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.84■□□□□ 0.77
SF3A1Q15459 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 MINOS1P3-201ENST00000457048 203 ntBASIC19.84■□□□□ 0.77
SF3A1Q15459 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.84■□□□□ 0.77
SF3A1Q15459 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.84■□□□□ 0.77
SF3A1Q15459 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SF3A1Q15459 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 AC105020.1-201ENST00000435356 2205 ntBASIC19.84■□□□□ 0.77
SF3A1Q15459 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.84■□□□□ 0.77
SF3A1Q15459 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SF3A1Q15459 INTS4P1-201ENST00000438455 1935 ntBASIC19.84■□□□□ 0.77
SF3A1Q15459 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SF3A1Q15459 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.84■□□□□ 0.77
SF3A1Q15459 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SF3A1Q15459 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SF3A1Q15459 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SF3A1Q15459 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SF3A1Q15459 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SF3A1Q15459 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.83■□□□□ 0.77
SF3A1Q15459 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SF3A1Q15459 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SF3A1Q15459 AC009336.1-201ENST00000608941 1553 ntBASIC19.83■□□□□ 0.77
SF3A1Q15459 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.83■□□□□ 0.77
SF3A1Q15459 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.77
SF3A1Q15459 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SF3A1Q15459 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SF3A1Q15459 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.83■□□□□ 0.77
SF3A1Q15459 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.83■□□□□ 0.77
SF3A1Q15459 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SF3A1Q15459 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SF3A1Q15459 RCN1P2-201ENST00000398357 915 ntBASIC19.83■□□□□ 0.77
SF3A1Q15459 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.83■□□□□ 0.77
SF3A1Q15459 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.83■□□□□ 0.77
SF3A1Q15459 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.83■□□□□ 0.77
SF3A1Q15459 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.83■□□□□ 0.77
SF3A1Q15459 STK19B-204ENST00000512515 211 ntBASIC19.83■□□□□ 0.77
SF3A1Q15459 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.83■□□□□ 0.77
SF3A1Q15459 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.83■□□□□ 0.77
SF3A1Q15459 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.83■□□□□ 0.77
SF3A1Q15459 NPAP1P7-201ENST00000613027 823 ntBASIC19.83■□□□□ 0.77
SF3A1Q15459 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.77
SF3A1Q15459 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms