Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 UBC-206ENST00000538617 1303 ntTSL 5 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 LINC01238-205ENST00000567549 1107 ntBASIC13.2□□□□□ -0.3
HIST1H1AQ02539 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 AL390719.2-201ENST00000606993 987 ntBASIC13.2□□□□□ -0.3
HIST1H1AQ02539 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIST1H1AQ02539 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 BAALC-202ENST00000306391 243 ntTSL 5 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 BAALC-204ENST00000330955 222 ntTSL 5 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 AC068472.1-201ENST00000474589 881 ntBASIC13.19□□□□□ -0.3
HIST1H1AQ02539 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 CLN6-204ENST00000564752 900 ntTSL 3 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 CLN6-214ENST00000636314 442 ntTSL 3 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 AC005052.1-201ENST00000625181 2492 ntBASIC13.19□□□□□ -0.3
HIST1H1AQ02539 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.19□□□□□ -0.3
HIST1H1AQ02539 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms