Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC22.39■■□□□ 1.18
RIPK4P57078 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
RIPK4P57078 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
RIPK4P57078 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
RIPK4P57078 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
RIPK4P57078 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
RIPK4P57078 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
RIPK4P57078 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
RIPK4P57078 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
RIPK4P57078 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
RIPK4P57078 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
RIPK4P57078 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
RIPK4P57078 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RIPK4P57078 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
RIPK4P57078 ATP6V0CP3-201ENST00000417255 467 ntBASIC22.39■■□□□ 1.17
RIPK4P57078 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC22.39■■□□□ 1.17
RIPK4P57078 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC22.39■■□□□ 1.17
RIPK4P57078 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
RIPK4P57078 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RIPK4P57078 DUX4L17-201ENST00000557360 1267 ntBASIC22.39■■□□□ 1.17
RIPK4P57078 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
RIPK4P57078 REXO1L3P-201ENST00000622202 1288 ntBASIC22.39■■□□□ 1.17
RIPK4P57078 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC22.39■■□□□ 1.17
RIPK4P57078 AC010507.1-201ENST00000633895 436 ntBASIC22.39■■□□□ 1.17
RIPK4P57078 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RIPK4P57078 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
RIPK4P57078 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
RIPK4P57078 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
RIPK4P57078 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RIPK4P57078 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
RIPK4P57078 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
RIPK4P57078 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC22.38■■□□□ 1.17
RIPK4P57078 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC22.38■■□□□ 1.17
RIPK4P57078 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC22.38■■□□□ 1.17
RIPK4P57078 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RIPK4P57078 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RIPK4P57078 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RIPK4P57078 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
RIPK4P57078 IMP4-203ENST00000409935 958 ntTSL 5 BASIC22.38■■□□□ 1.17
RIPK4P57078 FAM185BP-201ENST00000443595 716 ntBASIC22.38■■□□□ 1.17
RIPK4P57078 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC22.38■■□□□ 1.17
RIPK4P57078 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC22.38■■□□□ 1.17
RIPK4P57078 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC22.38■■□□□ 1.17
RIPK4P57078 AC107918.2-201ENST00000530817 355 ntBASIC22.38■■□□□ 1.17
RIPK4P57078 CALM1-205ENST00000553542 877 ntTSL 5 BASIC22.38■■□□□ 1.17
RIPK4P57078 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC22.38■■□□□ 1.17
RIPK4P57078 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
RIPK4P57078 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RIPK4P57078 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC22.38■■□□□ 1.17
RIPK4P57078 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
RIPK4P57078 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC22.38■■□□□ 1.17
RIPK4P57078 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
RIPK4P57078 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
RIPK4P57078 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC22.38■■□□□ 1.17
RIPK4P57078 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
RIPK4P57078 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RIPK4P57078 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
RIPK4P57078 CYP51A1P2-201ENST00000419457 1499 ntBASIC22.37■■□□□ 1.17
RIPK4P57078 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
RIPK4P57078 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
RIPK4P57078 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
RIPK4P57078 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
RIPK4P57078 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RIPK4P57078 AC023274.1-201ENST00000418278 595 ntBASIC22.37■■□□□ 1.17
RIPK4P57078 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RIPK4P57078 CXCL1P1-201ENST00000502804 216 ntBASIC22.37■■□□□ 1.17
RIPK4P57078 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC22.37■■□□□ 1.17
RIPK4P57078 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
RIPK4P57078 AC096734.2-201ENST00000562054 433 ntBASIC22.37■■□□□ 1.17
RIPK4P57078 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC22.37■■□□□ 1.17
RIPK4P57078 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC22.37■■□□□ 1.17
RIPK4P57078 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC22.37■■□□□ 1.17
RIPK4P57078 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC22.37■■□□□ 1.17
RIPK4P57078 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC22.37■■□□□ 1.17
RIPK4P57078 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
RIPK4P57078 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RIPK4P57078 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
RIPK4P57078 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RIPK4P57078 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RIPK4P57078 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC22.37■■□□□ 1.17
RIPK4P57078 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RIPK4P57078 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC22.36■■□□□ 1.17
RIPK4P57078 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC22.36■■□□□ 1.17
RIPK4P57078 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RIPK4P57078 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC22.36■■□□□ 1.17
RIPK4P57078 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
RIPK4P57078 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC22.36■■□□□ 1.17
RIPK4P57078 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RIPK4P57078 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC22.36■■□□□ 1.17
RIPK4P57078 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
RIPK4P57078 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RIPK4P57078 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RIPK4P57078 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC22.36■■□□□ 1.17
RIPK4P57078 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC22.36■■□□□ 1.17
RIPK4P57078 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
RIPK4P57078 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RIPK4P57078 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC22.36■■□□□ 1.17
RIPK4P57078 RHOQP3-201ENST00000437982 621 ntBASIC22.36■■□□□ 1.17
RIPK4P57078 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC22.36■■□□□ 1.17
RIPK4P57078 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC22.36■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms