Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PEX3P56589 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PEX3P56589 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PEX3P56589 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PEX3P56589 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PEX3P56589 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PEX3P56589 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PEX3P56589 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.89■□□□□ 0.61
PEX3P56589 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PEX3P56589 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PEX3P56589 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PEX3P56589 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.88■□□□□ 0.61
PEX3P56589 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.88■□□□□ 0.61
PEX3P56589 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.88■□□□□ 0.61
PEX3P56589 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.88■□□□□ 0.61
PEX3P56589 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.88■□□□□ 0.61
PEX3P56589 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.88■□□□□ 0.61
PEX3P56589 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PEX3P56589 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 ZNF259P1-201ENST00000407656 1365 ntBASIC18.88■□□□□ 0.61
PEX3P56589 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.88■□□□□ 0.61
PEX3P56589 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PEX3P56589 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.88■□□□□ 0.61
PEX3P56589 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PEX3P56589 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
PEX3P56589 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.87■□□□□ 0.61
PEX3P56589 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PEX3P56589 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
PEX3P56589 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.87■□□□□ 0.61
PEX3P56589 FRMD8P1-201ENST00000440433 1524 ntBASIC18.87■□□□□ 0.61
PEX3P56589 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.87■□□□□ 0.61
PEX3P56589 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.87■□□□□ 0.61
PEX3P56589 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.87■□□□□ 0.61
PEX3P56589 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PEX3P56589 MIR4751-201ENST00000578027 74 ntBASIC18.87■□□□□ 0.61
PEX3P56589 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.87■□□□□ 0.61
PEX3P56589 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
PEX3P56589 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
PEX3P56589 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PEX3P56589 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PEX3P56589 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PEX3P56589 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
PEX3P56589 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PEX3P56589 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.86■□□□□ 0.61
PEX3P56589 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PEX3P56589 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.86■□□□□ 0.61
PEX3P56589 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
PEX3P56589 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PEX3P56589 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PEX3P56589 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PEX3P56589 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.86■□□□□ 0.61
PEX3P56589 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PEX3P56589 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PEX3P56589 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PEX3P56589 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PEX3P56589 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.86■□□□□ 0.61
PEX3P56589 MRPL20P1-201ENST00000400819 433 ntBASIC18.86■□□□□ 0.61
PEX3P56589 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.86■□□□□ 0.61
PEX3P56589 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PEX3P56589 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PEX3P56589 AC087163.2-201ENST00000457299 853 ntBASIC18.86■□□□□ 0.61
PEX3P56589 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.86■□□□□ 0.61
PEX3P56589 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms