Protein–RNA interactions for Protein: P53671

LIMK2, LIM domain kinase 2, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2P53671 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.32■□□□□ 0.36
LIMK2P53671 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMK2P53671 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
LIMK2P53671 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LIMK2P53671 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LIMK2P53671 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LIMK2P53671 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
LIMK2P53671 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMK2P53671 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMK2P53671 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMK2P53671 AP001005.1-201ENST00000571755 1248 ntBASIC17.32■□□□□ 0.36
LIMK2P53671 STK25P1-201ENST00000585406 838 ntBASIC17.32■□□□□ 0.36
LIMK2P53671 AC008608.2-201ENST00000606089 416 ntBASIC17.32■□□□□ 0.36
LIMK2P53671 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMK2P53671 BX640515.1-201ENST00000617215 977 ntBASIC17.32■□□□□ 0.36
LIMK2P53671 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
LIMK2P53671 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK2P53671 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMK2P53671 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
LIMK2P53671 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.31■□□□□ 0.36
LIMK2P53671 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
LIMK2P53671 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LIMK2P53671 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.31■□□□□ 0.36
LIMK2P53671 PCDHA14-201ENST00000506751 2298 ntBASIC17.31■□□□□ 0.36
LIMK2P53671 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LIMK2P53671 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LIMK2P53671 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.31■□□□□ 0.36
LIMK2P53671 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.31■□□□□ 0.36
LIMK2P53671 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
LIMK2P53671 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 KRT18P67-201ENST00000432816 1264 ntBASIC17.31■□□□□ 0.36
LIMK2P53671 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.31■□□□□ 0.36
LIMK2P53671 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
LIMK2P53671 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.31■□□□□ 0.36
LIMK2P53671 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.31■□□□□ 0.36
LIMK2P53671 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.31■□□□□ 0.36
LIMK2P53671 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.31■□□□□ 0.36
LIMK2P53671 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
LIMK2P53671 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LIMK2P53671 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
LIMK2P53671 EGFEM1P-202ENST00000431685 1563 ntBASIC17.31■□□□□ 0.36
LIMK2P53671 TNRC18P3-201ENST00000441896 2691 ntBASIC17.31■□□□□ 0.36
LIMK2P53671 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK2P53671 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.31■□□□□ 0.36
LIMK2P53671 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
LIMK2P53671 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK2P53671 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
LIMK2P53671 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK2P53671 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK2P53671 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.3■□□□□ 0.36
LIMK2P53671 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.3■□□□□ 0.36
LIMK2P53671 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK2P53671 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK2P53671 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LIMK2P53671 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 AL590627.1-203ENST00000421194 1026 ntBASIC17.3■□□□□ 0.36
LIMK2P53671 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LIMK2P53671 AF186996.4-201ENST00000467186 377 ntBASIC17.3■□□□□ 0.36
LIMK2P53671 RNA5SP419-201ENST00000515908 135 ntBASIC17.3■□□□□ 0.36
LIMK2P53671 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.3■□□□□ 0.36
LIMK2P53671 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK2P53671 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.3■□□□□ 0.36
LIMK2P53671 AC120114.3-201ENST00000611923 658 ntBASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms