Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.92■□□□□ 0.3
LIMK1P53667 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.92■□□□□ 0.3
LIMK1P53667 NME2P1-201ENST00000426182 414 ntBASIC16.92■□□□□ 0.3
LIMK1P53667 AL513480.1-201ENST00000451731 511 ntBASIC16.92■□□□□ 0.3
LIMK1P53667 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMK1P53667 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.92■□□□□ 0.3
LIMK1P53667 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.92■□□□□ 0.3
LIMK1P53667 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.92■□□□□ 0.3
LIMK1P53667 AL158211.3-201ENST00000607385 239 ntBASIC16.92■□□□□ 0.3
LIMK1P53667 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMK1P53667 PI4KAP1-204ENST00000612579 1703 ntBASIC16.92■□□□□ 0.3
LIMK1P53667 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.92■□□□□ 0.3
LIMK1P53667 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMK1P53667 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMK1P53667 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
LIMK1P53667 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.91■□□□□ 0.3
LIMK1P53667 AC012313.1-201ENST00000593393 3059 ntBASIC16.91■□□□□ 0.3
LIMK1P53667 GNAS-203ENST00000306120 1878 ntBASIC16.91■□□□□ 0.3
LIMK1P53667 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LIMK1P53667 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LIMK1P53667 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 LINC00982-205ENST00000420957 435 ntBASIC16.91■□□□□ 0.3
LIMK1P53667 SLC25A6P5-201ENST00000435663 894 ntBASIC16.91■□□□□ 0.3
LIMK1P53667 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.91■□□□□ 0.3
LIMK1P53667 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.91■□□□□ 0.3
LIMK1P53667 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 STK25P1-201ENST00000585406 838 ntBASIC16.91■□□□□ 0.3
LIMK1P53667 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 AC099522.2-201ENST00000607001 744 ntBASIC16.91■□□□□ 0.3
LIMK1P53667 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMK1P53667 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMK1P53667 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMK1P53667 FO538757.1-201ENST00000623083 1397 ntBASIC16.9■□□□□ 0.3
LIMK1P53667 AL645608.8-201ENST00000606034 2086 ntBASIC16.9■□□□□ 0.3
LIMK1P53667 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.9■□□□□ 0.3
LIMK1P53667 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
LIMK1P53667 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LIMK1P53667 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.9■□□□□ 0.3
LIMK1P53667 AL512638.1-201ENST00000457493 794 ntBASIC16.9■□□□□ 0.3
LIMK1P53667 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMK1P53667 STK19B-204ENST00000512515 211 ntBASIC16.9■□□□□ 0.3
LIMK1P53667 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.9■□□□□ 0.3
LIMK1P53667 SPDYE22P-201ENST00000582158 798 ntBASIC16.9■□□□□ 0.3
LIMK1P53667 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMK1P53667 AC019129.2-201ENST00000609837 1235 ntBASIC16.9■□□□□ 0.3
LIMK1P53667 AC025048.6-201ENST00000634326 1161 ntBASIC16.9■□□□□ 0.3
LIMK1P53667 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.9■□□□□ 0.3
LIMK1P53667 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMK1P53667 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMK1P53667 PCDHA12-202ENST00000613593 2588 ntBASIC16.9■□□□□ 0.3
LIMK1P53667 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMK1P53667 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms