Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.16■□□□□ 0.5
COL4A4P53420 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL4A4P53420 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
COL4A4P53420 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
COL4A4P53420 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL4A4P53420 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 HILS1-202ENST00000545329 423 ntBASIC18.15■□□□□ 0.5
COL4A4P53420 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A4P53420 WASH4P-201ENST00000564273 1246 ntBASIC18.15■□□□□ 0.5
COL4A4P53420 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.15■□□□□ 0.5
COL4A4P53420 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A4P53420 AL359881.2-201ENST00000602973 570 ntBASIC18.15■□□□□ 0.5
COL4A4P53420 SPDYE12P-201ENST00000618416 771 ntBASIC18.15■□□□□ 0.5
COL4A4P53420 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
COL4A4P53420 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A4P53420 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
COL4A4P53420 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
COL4A4P53420 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A4P53420 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 AC022144.1-201ENST00000602255 1580 ntBASIC18.15■□□□□ 0.5
COL4A4P53420 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A4P53420 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A4P53420 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A4P53420 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.15■□□□□ 0.5
COL4A4P53420 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.15■□□□□ 0.5
COL4A4P53420 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A4P53420 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A4P53420 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A4P53420 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.15■□□□□ 0.5
COL4A4P53420 AC027307.3-201ENST00000594262 1100 ntBASIC18.15■□□□□ 0.5
COL4A4P53420 AL132655.2-201ENST00000596276 594 ntBASIC18.15■□□□□ 0.5
COL4A4P53420 AL662799.1-202ENST00000614205 422 ntBASIC18.15■□□□□ 0.5
COL4A4P53420 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A4P53420 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.14■□□□□ 0.5
COL4A4P53420 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.5
COL4A4P53420 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL4A4P53420 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL4A4P53420 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
COL4A4P53420 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
COL4A4P53420 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.14■□□□□ 0.49
COL4A4P53420 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
COL4A4P53420 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 PP12613-201ENST00000424958 2230 ntBASIC18.14■□□□□ 0.49
COL4A4P53420 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.14■□□□□ 0.49
COL4A4P53420 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.14■□□□□ 0.49
COL4A4P53420 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.14■□□□□ 0.49
COL4A4P53420 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
COL4A4P53420 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.14■□□□□ 0.49
COL4A4P53420 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.14■□□□□ 0.49
COL4A4P53420 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A4P53420 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.13■□□□□ 0.49
COL4A4P53420 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.13■□□□□ 0.49
COL4A4P53420 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.13■□□□□ 0.49
COL4A4P53420 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.13■□□□□ 0.49
COL4A4P53420 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.13■□□□□ 0.49
COL4A4P53420 CR383656.12-201ENST00000549567 513 ntBASIC18.13■□□□□ 0.49
COL4A4P53420 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.13■□□□□ 0.49
COL4A4P53420 WASH6P-202ENST00000359512 1437 ntBASIC18.13■□□□□ 0.49
COL4A4P53420 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.13■□□□□ 0.49
COL4A4P53420 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
COL4A4P53420 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.13■□□□□ 0.49
COL4A4P53420 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A4P53420 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms