Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP11P51784 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP11P51784 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
USP11P51784 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP11P51784 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP11P51784 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.33■□□□□ 0.69
USP11P51784 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.33■□□□□ 0.69
USP11P51784 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP11P51784 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
USP11P51784 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
USP11P51784 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
USP11P51784 PMS2P1-201ENST00000431037 1228 ntBASIC19.33■□□□□ 0.68
USP11P51784 FAM185BP-201ENST00000443595 716 ntBASIC19.33■□□□□ 0.68
USP11P51784 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
USP11P51784 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.33■□□□□ 0.68
USP11P51784 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.33■□□□□ 0.68
USP11P51784 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP11P51784 AC140113.2-201ENST00000604370 208 ntBASIC19.33■□□□□ 0.68
USP11P51784 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP11P51784 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP11P51784 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP11P51784 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP11P51784 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.33■□□□□ 0.68
USP11P51784 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP11P51784 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP11P51784 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP11P51784 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP11P51784 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP11P51784 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP11P51784 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.33■□□□□ 0.68
USP11P51784 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 AL021920.2-201ENST00000624828 1351 ntBASIC19.32■□□□□ 0.68
USP11P51784 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.32■□□□□ 0.68
USP11P51784 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
USP11P51784 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 IGLL3P-201ENST00000412472 434 ntBASIC19.32■□□□□ 0.68
USP11P51784 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.32■□□□□ 0.68
USP11P51784 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.32■□□□□ 0.68
USP11P51784 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.32■□□□□ 0.68
USP11P51784 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
USP11P51784 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 AC107918.2-201ENST00000530817 355 ntBASIC19.32■□□□□ 0.68
USP11P51784 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.32■□□□□ 0.68
USP11P51784 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.32■□□□□ 0.68
USP11P51784 AC064836.3-201ENST00000607928 673 ntBASIC19.32■□□□□ 0.68
USP11P51784 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
USP11P51784 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP11P51784 TOP3BP1-201ENST00000420768 1380 ntBASIC19.32■□□□□ 0.68
USP11P51784 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 AC090340.1-201ENST00000620778 4980 ntBASIC19.31■□□□□ 0.68
USP11P51784 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.31■□□□□ 0.68
USP11P51784 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.31■□□□□ 0.68
USP11P51784 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.31■□□□□ 0.68
USP11P51784 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 KRT18P3-201ENST00000451602 1288 ntBASIC19.31■□□□□ 0.68
USP11P51784 CXCL1P1-201ENST00000502804 216 ntBASIC19.31■□□□□ 0.68
USP11P51784 AC096734.2-201ENST00000562054 433 ntBASIC19.31■□□□□ 0.68
USP11P51784 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
USP11P51784 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.31■□□□□ 0.68
USP11P51784 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.31■□□□□ 0.68
USP11P51784 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.31■□□□□ 0.68
USP11P51784 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
USP11P51784 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.31■□□□□ 0.68
USP11P51784 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP11P51784 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
USP11P51784 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.3■□□□□ 0.68
USP11P51784 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.3■□□□□ 0.68
USP11P51784 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP11P51784 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP11P51784 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
USP11P51784 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.3■□□□□ 0.68
USP11P51784 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.3■□□□□ 0.68
USP11P51784 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
USP11P51784 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.3■□□□□ 0.68
USP11P51784 MED15P5-201ENST00000423150 992 ntBASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms