Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC14.31□□□□□ -0.12
HOXA1P49639 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HOXA1P49639 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXA1P49639 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXA1P49639 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HOXA1P49639 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
HOXA1P49639 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 PBK-203ENST00000522944 1499 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXA1P49639 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HOXA1P49639 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXA1P49639 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
HOXA1P49639 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC14.3□□□□□ -0.12
HOXA1P49639 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
HOXA1P49639 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
HOXA1P49639 AL009178.2-201ENST00000597278 2719 ntBASIC14.3□□□□□ -0.12
HOXA1P49639 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXA1P49639 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXA1P49639 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
HOXA1P49639 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC14.3□□□□□ -0.12
HOXA1P49639 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXA1P49639 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
HOXA1P49639 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
HOXA1P49639 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXA1P49639 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC14.3□□□□□ -0.12
HOXA1P49639 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXA1P49639 AL512604.3-201ENST00000569583 964 ntBASIC14.3□□□□□ -0.12
HOXA1P49639 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
HOXA1P49639 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HOXA1P49639 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
HOXA1P49639 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HOXA1P49639 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HOXA1P49639 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HOXA1P49639 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
HOXA1P49639 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA1P49639 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
HOXA1P49639 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
HOXA1P49639 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXA1P49639 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
HOXA1P49639 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXA1P49639 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
HOXA1P49639 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 TSPY14P-201ENST00000303979 915 ntBASIC14.29□□□□□ -0.12
HOXA1P49639 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 EGLN1P1-201ENST00000531623 762 ntBASIC14.29□□□□□ -0.12
HOXA1P49639 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC14.29□□□□□ -0.12
HOXA1P49639 MIR3917-201ENST00000580971 93 ntBASIC14.29□□□□□ -0.12
HOXA1P49639 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXA1P49639 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXA1P49639 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 LINC00167-201ENST00000530583 1419 ntBASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms