Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.17■□□□□ 0.18
RFX3P48380 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 KLF4P1-201ENST00000412782 1185 ntBASIC16.17■□□□□ 0.18
RFX3P48380 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.17■□□□□ 0.18
RFX3P48380 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 KRT18P56-201ENST00000507275 550 ntBASIC16.17■□□□□ 0.18
RFX3P48380 STK19B-204ENST00000512515 211 ntBASIC16.17■□□□□ 0.18
RFX3P48380 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 MIR5100-201ENST00000579544 119 ntBASIC16.17■□□□□ 0.18
RFX3P48380 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.17■□□□□ 0.18
RFX3P48380 AC073592.5-201ENST00000624854 528 ntBASIC16.17■□□□□ 0.18
RFX3P48380 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.17■□□□□ 0.18
RFX3P48380 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX3P48380 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX3P48380 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.17■□□□□ 0.18
RFX3P48380 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
RFX3P48380 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RFX3P48380 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.16■□□□□ 0.18
RFX3P48380 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RFX3P48380 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RFX3P48380 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RFX3P48380 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RFX3P48380 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.16■□□□□ 0.18
RFX3P48380 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.16■□□□□ 0.18
RFX3P48380 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.16■□□□□ 0.18
RFX3P48380 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.16■□□□□ 0.18
RFX3P48380 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.16■□□□□ 0.18
RFX3P48380 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RFX3P48380 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.16■□□□□ 0.18
RFX3P48380 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.16■□□□□ 0.18
RFX3P48380 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.16■□□□□ 0.18
RFX3P48380 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RFX3P48380 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RFX3P48380 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX3P48380 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RFX3P48380 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.15■□□□□ 0.18
RFX3P48380 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
RFX3P48380 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.15■□□□□ 0.18
RFX3P48380 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.15■□□□□ 0.18
RFX3P48380 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.15■□□□□ 0.18
RFX3P48380 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms