Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL12P48061 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.94■□□□□ 0.3
CXCL12P48061 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL12P48061 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL12P48061 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CXCL12P48061 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.93■□□□□ 0.3
CXCL12P48061 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.93■□□□□ 0.3
CXCL12P48061 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CXCL12P48061 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.93■□□□□ 0.3
CXCL12P48061 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
CXCL12P48061 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.93■□□□□ 0.3
CXCL12P48061 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CXCL12P48061 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.93■□□□□ 0.3
CXCL12P48061 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.93■□□□□ 0.3
CXCL12P48061 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.93■□□□□ 0.3
CXCL12P48061 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.93■□□□□ 0.3
CXCL12P48061 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CXCL12P48061 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.93■□□□□ 0.3
CXCL12P48061 AC091167.2-201ENST00000579581 588 ntBASIC16.93■□□□□ 0.3
CXCL12P48061 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.93■□□□□ 0.3
CXCL12P48061 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
CXCL12P48061 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.93■□□□□ 0.3
CXCL12P48061 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 AC016027.1-202ENST00000607927 1699 ntBASIC16.93■□□□□ 0.3
CXCL12P48061 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
CXCL12P48061 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
CXCL12P48061 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.93■□□□□ 0.3
CXCL12P48061 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CXCL12P48061 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
CXCL12P48061 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
CXCL12P48061 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL12P48061 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CXCL12P48061 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CXCL12P48061 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CXCL12P48061 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CXCL12P48061 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CXCL12P48061 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.92■□□□□ 0.3
CXCL12P48061 ATP5G2P4-201ENST00000442175 420 ntBASIC16.92■□□□□ 0.3
CXCL12P48061 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.92■□□□□ 0.3
CXCL12P48061 SPTLC1P1-201ENST00000447199 261 ntBASIC16.92■□□□□ 0.3
CXCL12P48061 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CXCL12P48061 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.92■□□□□ 0.3
CXCL12P48061 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.92■□□□□ 0.3
CXCL12P48061 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.92■□□□□ 0.3
CXCL12P48061 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.92■□□□□ 0.3
CXCL12P48061 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 AL138918.1-201ENST00000568306 659 ntBASIC16.92■□□□□ 0.3
CXCL12P48061 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CXCL12P48061 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.92■□□□□ 0.3
CXCL12P48061 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.92■□□□□ 0.3
CXCL12P48061 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.92■□□□□ 0.3
CXCL12P48061 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL12P48061 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CXCL12P48061 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CXCL12P48061 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CXCL12P48061 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CXCL12P48061 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC16.91■□□□□ 0.3
CXCL12P48061 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
CXCL12P48061 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
CXCL12P48061 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.91■□□□□ 0.3
CXCL12P48061 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.91■□□□□ 0.3
CXCL12P48061 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.91■□□□□ 0.3
CXCL12P48061 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.91■□□□□ 0.3
CXCL12P48061 RARRES2P9-201ENST00000565168 469 ntBASIC16.91■□□□□ 0.3
CXCL12P48061 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.91■□□□□ 0.3
CXCL12P48061 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms