Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.81■□□□□ 0.44
PTPN9P43378 AC012640.2-201ENST00000561606 901 ntBASIC17.81■□□□□ 0.44
PTPN9P43378 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.81■□□□□ 0.44
PTPN9P43378 FAM215A-202ENST00000632077 792 ntBASIC17.81■□□□□ 0.44
PTPN9P43378 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
PTPN9P43378 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
PTPN9P43378 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.81■□□□□ 0.44
PTPN9P43378 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.81■□□□□ 0.44
PTPN9P43378 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PTPN9P43378 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.81■□□□□ 0.44
PTPN9P43378 AC005915.1-201ENST00000624912 2018 ntBASIC17.81■□□□□ 0.44
PTPN9P43378 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.81■□□□□ 0.44
PTPN9P43378 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.81■□□□□ 0.44
PTPN9P43378 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PTPN9P43378 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.8■□□□□ 0.44
PTPN9P43378 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
PTPN9P43378 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PTPN9P43378 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.8■□□□□ 0.44
PTPN9P43378 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.8■□□□□ 0.44
PTPN9P43378 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.8■□□□□ 0.44
PTPN9P43378 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PTPN9P43378 RPS15P9-201ENST00000494093 319 ntBASIC17.8■□□□□ 0.44
PTPN9P43378 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.8■□□□□ 0.44
PTPN9P43378 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.8■□□□□ 0.44
PTPN9P43378 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.8■□□□□ 0.44
PTPN9P43378 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
PTPN9P43378 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.8■□□□□ 0.44
PTPN9P43378 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.8■□□□□ 0.44
PTPN9P43378 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.8■□□□□ 0.44
PTPN9P43378 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.8■□□□□ 0.44
PTPN9P43378 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
PTPN9P43378 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
PTPN9P43378 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.8■□□□□ 0.44
PTPN9P43378 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN9P43378 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.79■□□□□ 0.44
PTPN9P43378 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PTPN9P43378 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.79■□□□□ 0.44
PTPN9P43378 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.79■□□□□ 0.44
PTPN9P43378 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.79■□□□□ 0.44
PTPN9P43378 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.79■□□□□ 0.44
PTPN9P43378 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.79■□□□□ 0.44
PTPN9P43378 MRPL3P1-201ENST00000400109 1033 ntBASIC17.79■□□□□ 0.44
PTPN9P43378 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 AL031284.1-201ENST00000419297 478 ntBASIC17.79■□□□□ 0.44
PTPN9P43378 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.79■□□□□ 0.44
PTPN9P43378 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.79■□□□□ 0.44
PTPN9P43378 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 AL356488.2-201ENST00000602755 427 ntBASIC17.79■□□□□ 0.44
PTPN9P43378 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.79■□□□□ 0.44
PTPN9P43378 MIR1199-201ENST00000621445 119 ntBASIC17.79■□□□□ 0.44
PTPN9P43378 PGM5P2-202ENST00000637225 1043 ntBASIC17.79■□□□□ 0.44
PTPN9P43378 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.79■□□□□ 0.44
PTPN9P43378 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PTPN9P43378 PCDHA12-202ENST00000613593 2588 ntBASIC17.79■□□□□ 0.44
PTPN9P43378 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PTPN9P43378 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN9P43378 AL021920.2-201ENST00000624828 1351 ntBASIC17.79■□□□□ 0.44
PTPN9P43378 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.78■□□□□ 0.44
PTPN9P43378 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.78■□□□□ 0.44
PTPN9P43378 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
PTPN9P43378 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PTPN9P43378 PI4KAP1-204ENST00000612579 1703 ntBASIC17.78■□□□□ 0.44
PTPN9P43378 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.78■□□□□ 0.44
PTPN9P43378 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.78■□□□□ 0.44
PTPN9P43378 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms