Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL645728.2-201ENST00000641974 660 ntBASIC19.61■□□□□ 0.73
SMARCA1P28370 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCA1P28370 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.61■□□□□ 0.73
SMARCA1P28370 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCA1P28370 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.61■□□□□ 0.73
SMARCA1P28370 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
SMARCA1P28370 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCA1P28370 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCA1P28370 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.6■□□□□ 0.73
SMARCA1P28370 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCA1P28370 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCA1P28370 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.6■□□□□ 0.73
SMARCA1P28370 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SMARCA1P28370 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCA1P28370 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCA1P28370 HCG4-201ENST00000418983 998 ntBASIC19.6■□□□□ 0.73
SMARCA1P28370 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.6■□□□□ 0.73
SMARCA1P28370 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
SMARCA1P28370 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.6■□□□□ 0.73
SMARCA1P28370 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.6■□□□□ 0.73
SMARCA1P28370 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
SMARCA1P28370 MIR4492-201ENST00000581627 80 ntBASIC19.6■□□□□ 0.73
SMARCA1P28370 MPDU1-223ENST00000582151 728 ntBASIC19.6■□□□□ 0.73
SMARCA1P28370 MIR4515-201ENST00000584082 81 ntBASIC19.6■□□□□ 0.73
SMARCA1P28370 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCA1P28370 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
SMARCA1P28370 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCA1P28370 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCA1P28370 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCA1P28370 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.59■□□□□ 0.73
SMARCA1P28370 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
SMARCA1P28370 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SMARCA1P28370 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 AC004832.2-201ENST00000426397 482 ntBASIC19.59■□□□□ 0.73
SMARCA1P28370 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.59■□□□□ 0.73
SMARCA1P28370 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.59■□□□□ 0.73
SMARCA1P28370 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.59■□□□□ 0.73
SMARCA1P28370 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.59■□□□□ 0.73
SMARCA1P28370 AC013467.2-201ENST00000605472 835 ntBASIC19.59■□□□□ 0.73
SMARCA1P28370 AC004877.2-201ENST00000623941 599 ntBASIC19.59■□□□□ 0.73
SMARCA1P28370 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.59■□□□□ 0.73
SMARCA1P28370 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCA1P28370 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCA1P28370 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.58■□□□□ 0.73
SMARCA1P28370 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCA1P28370 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
SMARCA1P28370 AL121761.2-201ENST00000598007 1648 ntBASIC19.58■□□□□ 0.73
SMARCA1P28370 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.58■□□□□ 0.73
SMARCA1P28370 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCA1P28370 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
SMARCA1P28370 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
SMARCA1P28370 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCA1P28370 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCA1P28370 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCA1P28370 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.58■□□□□ 0.73
SMARCA1P28370 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
SMARCA1P28370 MIR940-201ENST00000401276 94 ntBASIC19.58■□□□□ 0.72
SMARCA1P28370 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.58■□□□□ 0.72
SMARCA1P28370 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.58■□□□□ 0.72
SMARCA1P28370 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SMARCA1P28370 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.58■□□□□ 0.72
SMARCA1P28370 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.58■□□□□ 0.72
SMARCA1P28370 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMARCA1P28370 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMARCA1P28370 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.58■□□□□ 0.72
SMARCA1P28370 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMARCA1P28370 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMARCA1P28370 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SMARCA1P28370 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.57■□□□□ 0.72
SMARCA1P28370 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.57■□□□□ 0.72
SMARCA1P28370 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.57■□□□□ 0.72
SMARCA1P28370 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SMARCA1P28370 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.57■□□□□ 0.72
SMARCA1P28370 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.57■□□□□ 0.72
SMARCA1P28370 MCCD1P2-201ENST00000423228 335 ntBASIC19.57■□□□□ 0.72
SMARCA1P28370 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.57■□□□□ 0.72
SMARCA1P28370 AL513480.1-201ENST00000451731 511 ntBASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms