Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
ERCC3P19447 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.85■□□□□ 0.77
ERCC3P19447 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.85■□□□□ 0.77
ERCC3P19447 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.85■□□□□ 0.77
ERCC3P19447 CXCL1P1-201ENST00000502804 216 ntBASIC19.85■□□□□ 0.77
ERCC3P19447 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.85■□□□□ 0.77
ERCC3P19447 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.85■□□□□ 0.77
ERCC3P19447 AC091812.2-201ENST00000619081 385 ntBASIC19.85■□□□□ 0.77
ERCC3P19447 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.85■□□□□ 0.77
ERCC3P19447 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.85■□□□□ 0.77
ERCC3P19447 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.85■□□□□ 0.77
ERCC3P19447 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.85■□□□□ 0.77
ERCC3P19447 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ERCC3P19447 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
ERCC3P19447 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.84■□□□□ 0.77
ERCC3P19447 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ERCC3P19447 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.84■□□□□ 0.77
ERCC3P19447 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ERCC3P19447 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.84■□□□□ 0.77
ERCC3P19447 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
ERCC3P19447 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
ERCC3P19447 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.84■□□□□ 0.77
ERCC3P19447 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
ERCC3P19447 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ERCC3P19447 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.84■□□□□ 0.77
ERCC3P19447 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ERCC3P19447 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ERCC3P19447 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.84■□□□□ 0.77
ERCC3P19447 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.84■□□□□ 0.77
ERCC3P19447 ACTG1P14-201ENST00000446382 1122 ntBASIC19.84■□□□□ 0.77
ERCC3P19447 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
ERCC3P19447 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.84■□□□□ 0.77
ERCC3P19447 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.84■□□□□ 0.77
ERCC3P19447 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ERCC3P19447 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ERCC3P19447 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ERCC3P19447 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
ERCC3P19447 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ERCC3P19447 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.84■□□□□ 0.77
ERCC3P19447 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
ERCC3P19447 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
ERCC3P19447 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ERCC3P19447 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
ERCC3P19447 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ERCC3P19447 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.77
ERCC3P19447 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.83■□□□□ 0.77
ERCC3P19447 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.83■□□□□ 0.77
ERCC3P19447 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
ERCC3P19447 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
ERCC3P19447 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
ERCC3P19447 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ERCC3P19447 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.83■□□□□ 0.77
ERCC3P19447 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC19.83■□□□□ 0.77
ERCC3P19447 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.83■□□□□ 0.77
ERCC3P19447 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.83■□□□□ 0.77
ERCC3P19447 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
ERCC3P19447 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.83■□□□□ 0.77
ERCC3P19447 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC3P19447 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC3P19447 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC3P19447 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC3P19447 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC3P19447 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC3P19447 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC3P19447 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
ERCC3P19447 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC3P19447 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
ERCC3P19447 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.82■□□□□ 0.76
ERCC3P19447 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC3P19447 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
ERCC3P19447 FLJ13224-201ENST00000313737 1514 ntBASIC19.82■□□□□ 0.76
ERCC3P19447 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC3P19447 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC3P19447 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.82■□□□□ 0.76
ERCC3P19447 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.82■□□□□ 0.76
ERCC3P19447 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
ERCC3P19447 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.82■□□□□ 0.76
ERCC3P19447 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
ERCC3P19447 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC3P19447 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC3P19447 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.82■□□□□ 0.76
ERCC3P19447 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.82■□□□□ 0.76
ERCC3P19447 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.82■□□□□ 0.76
ERCC3P19447 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms