Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM38O00635 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 AL355312.1-201ENST00000407115 2176 ntBASIC17.31■□□□□ 0.36
TRIM38O00635 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRIM38O00635 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
TRIM38O00635 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRIM38O00635 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRIM38O00635 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM38O00635 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.31■□□□□ 0.36
TRIM38O00635 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 AC004817.3-201ENST00000602957 2129 ntBASIC17.31■□□□□ 0.36
TRIM38O00635 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM38O00635 AL022326.1-202ENST00000641533 845 ntBASIC17.31■□□□□ 0.36
TRIM38O00635 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM38O00635 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM38O00635 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM38O00635 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
TRIM38O00635 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM38O00635 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM38O00635 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM38O00635 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM38O00635 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM38O00635 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM38O00635 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM38O00635 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM38O00635 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM38O00635 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
TRIM38O00635 RPSAP43-201ENST00000402237 625 ntBASIC17.3■□□□□ 0.36
TRIM38O00635 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.3■□□□□ 0.36
TRIM38O00635 AC096633.1-201ENST00000422446 749 ntBASIC17.3■□□□□ 0.36
TRIM38O00635 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM38O00635 AC007967.2-201ENST00000432613 625 ntBASIC17.3■□□□□ 0.36
TRIM38O00635 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM38O00635 AC009947.1-201ENST00000444350 727 ntBASIC17.3■□□□□ 0.36
TRIM38O00635 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.3■□□□□ 0.36
TRIM38O00635 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.3■□□□□ 0.36
TRIM38O00635 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.3■□□□□ 0.36
TRIM38O00635 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.3■□□□□ 0.36
TRIM38O00635 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TRIM38O00635 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
TRIM38O00635 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM38O00635 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM38O00635 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TRIM38O00635 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRIM38O00635 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM38O00635 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
TRIM38O00635 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM38O00635 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM38O00635 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM38O00635 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM38O00635 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM38O00635 YBX2P1-201ENST00000394192 760 ntBASIC17.29■□□□□ 0.36
TRIM38O00635 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.29■□□□□ 0.36
TRIM38O00635 GPX1P2-201ENST00000429271 606 ntBASIC17.29■□□□□ 0.36
TRIM38O00635 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM38O00635 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM38O00635 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.29■□□□□ 0.36
TRIM38O00635 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
TRIM38O00635 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM38O00635 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRIM38O00635 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM38O00635 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms