Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TMX2-CTNND1H3BSU7 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TMX2-CTNND1H3BSU7 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
TMX2-CTNND1H3BSU7 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.91■□□□□ 0.3
TMX2-CTNND1H3BSU7 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TMX2-CTNND1H3BSU7 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TMX2-CTNND1H3BSU7 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TMX2-CTNND1H3BSU7 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC008741.2-201ENST00000612792 3115 ntBASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC093010.1-201ENST00000473625 1624 ntBASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC073621.1-201ENST00000392730 636 ntBASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC064836.3-201ENST00000607928 673 ntBASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC116407.2-201ENST00000613639 860 ntBASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TMX2-CTNND1H3BSU7 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
TMX2-CTNND1H3BSU7 PCDHB19P-201ENST00000570871 2371 ntBASIC16.89■□□□□ 0.3
TMX2-CTNND1H3BSU7 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.89■□□□□ 0.3
TMX2-CTNND1H3BSU7 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMX2-CTNND1H3BSU7 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMX2-CTNND1H3BSU7 CRYGEP-201ENST00000412192 528 ntBASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms