Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL6A5A8TX70 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13.13□□□□□ -0.31
COL6A5A8TX70 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 SRD5A3P1-201ENST00000603021 949 ntBASIC13.12□□□□□ -0.31
COL6A5A8TX70 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL6A5A8TX70 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL6A5A8TX70 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL6A5A8TX70 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 KRT8P19-201ENST00000551916 1455 ntBASIC13.12□□□□□ -0.31
COL6A5A8TX70 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL6A5A8TX70 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL6A5A8TX70 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL6A5A8TX70 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL6A5A8TX70 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL6A5A8TX70 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.12□□□□□ -0.31
COL6A5A8TX70 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL6A5A8TX70 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL6A5A8TX70 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL6A5A8TX70 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 PFN1P12-201ENST00000455938 534 ntBASIC13.11□□□□□ -0.31
COL6A5A8TX70 RN7SL769P-201ENST00000469386 295 ntBASIC13.11□□□□□ -0.31
COL6A5A8TX70 RN7SL618P-201ENST00000477850 296 ntBASIC13.11□□□□□ -0.31
COL6A5A8TX70 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 IGF1-203ENST00000392904 761 ntTSL 5 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 AMT-250ENST00000637682 1823 ntTSL 5 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL6A5A8TX70 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
COL6A5A8TX70 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 AC114501.2-201ENST00000439631 535 ntBASIC13.1□□□□□ -0.31
COL6A5A8TX70 FADS2-205ENST00000517839 469 ntTSL 3 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 DUTP2-201ENST00000519164 463 ntBASIC13.1□□□□□ -0.31
COL6A5A8TX70 NEU3-202ENST00000526068 431 ntTSL 2 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms