Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.46■□□□□ 0.22
PCDHGA1Q9Y5H4 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PCDHGA1Q9Y5H4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
PCDHGA1Q9Y5H4 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
PCDHGA1Q9Y5H4 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
PCDHGA1Q9Y5H4 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
PCDHGA1Q9Y5H4 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
PCDHGA1Q9Y5H4 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 RBPMS2P1-201ENST00000437762 623 ntBASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDHGA1Q9Y5H4 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 SPCS2P4-201ENST00000436160 681 ntBASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 AC107918.2-201ENST00000530817 355 ntBASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 AL158211.3-201ENST00000607385 239 ntBASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 AC084121.4-201ENST00000641598 221 ntBASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 AF228730.8-201ENST00000642140 221 ntBASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 KRT18P55-202ENST00000578578 1546 ntBASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDHGA1Q9Y5H4 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms