Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 BNIP3P18-201ENST00000593976 575 ntBASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 AC148477.5-201ENST00000625164 1645 ntBASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
LIMA1Q9UHB6 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIMA1Q9UHB6 AL391005.1-201ENST00000623953 2435 ntBASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMA1Q9UHB6 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 TMPOP1-202ENST00000424642 1267 ntBASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 FAM86EP-206ENST00000510506 987 ntBASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 AP000867.4-201ENST00000641616 219 ntBASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
LIMA1Q9UHB6 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms