Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 ACTL9-202ENST00000612068 1252 ntBASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 AL590787.1-201ENST00000568856 1315 ntBASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.89■□□□□ 0.46
LIMD1Q9UGP4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
LIMD1Q9UGP4 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 AC009949.1-201ENST00000623048 1830 ntBASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 GK-202ENST00000378941 458 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMD1Q9UGP4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 AC068880.1-201ENST00000507289 2297 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 AL592309.1-201ENST00000443127 649 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 CNN2P2-201ENST00000443536 909 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 TSPY16P-201ENST00000449843 468 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 CNN2P3-201ENST00000450201 906 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 SPDYE11-202ENST00000450699 704 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 TERF1P3-201ENST00000505638 1227 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 SPDYE9P-201ENST00000570642 692 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 RN7SL204P-201ENST00000582831 262 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 SPDYE10P-202ENST00000612005 668 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 SPDYE8P-202ENST00000612377 668 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 AL136317.3-201ENST00000618497 906 ntBASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.88■□□□□ 0.45
LIMD1Q9UGP4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.87■□□□□ 0.45
LIMD1Q9UGP4 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIMD1Q9UGP4 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
LIMD1Q9UGP4 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms