Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LRFN1Q9P244 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
LRFN1Q9P244 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LRFN1Q9P244 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC15.78■□□□□ 0.12
LRFN1Q9P244 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
LRFN1Q9P244 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.78■□□□□ 0.12
LRFN1Q9P244 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LRFN1Q9P244 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LRFN1Q9P244 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LRFN1Q9P244 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LRFN1Q9P244 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LRFN1Q9P244 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRFN1Q9P244 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.77■□□□□ 0.12
LRFN1Q9P244 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
LRFN1Q9P244 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LRFN1Q9P244 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRFN1Q9P244 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LRFN1Q9P244 IGLL3P-201ENST00000412472 434 ntBASIC15.77■□□□□ 0.12
LRFN1Q9P244 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.77■□□□□ 0.12
LRFN1Q9P244 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.77■□□□□ 0.12
LRFN1Q9P244 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LRFN1Q9P244 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.77■□□□□ 0.12
LRFN1Q9P244 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.77■□□□□ 0.12
LRFN1Q9P244 OR7E47P-204ENST00000575924 449 ntBASIC15.77■□□□□ 0.12
LRFN1Q9P244 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.77■□□□□ 0.12
LRFN1Q9P244 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
LRFN1Q9P244 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.77■□□□□ 0.12
LRFN1Q9P244 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRFN1Q9P244 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LRFN1Q9P244 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LRFN1Q9P244 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LRFN1Q9P244 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.77■□□□□ 0.11
LRFN1Q9P244 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.77■□□□□ 0.11
LRFN1Q9P244 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LRFN1Q9P244 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LRFN1Q9P244 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LRFN1Q9P244 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.77■□□□□ 0.11
LRFN1Q9P244 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
LRFN1Q9P244 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LRFN1Q9P244 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
LRFN1Q9P244 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 AL513190.1-201ENST00000621254 727 ntBASIC15.76■□□□□ 0.11
LRFN1Q9P244 AC004877.2-201ENST00000623941 599 ntBASIC15.76■□□□□ 0.11
LRFN1Q9P244 AC010507.1-201ENST00000633895 436 ntBASIC15.76■□□□□ 0.11
LRFN1Q9P244 AC079781.4-201ENST00000641908 219 ntBASIC15.76■□□□□ 0.11
LRFN1Q9P244 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LRFN1Q9P244 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.76■□□□□ 0.11
LRFN1Q9P244 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LRFN1Q9P244 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LRFN1Q9P244 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 BCAR1-209ENST00000546196 1340 ntBASIC15.75■□□□□ 0.11
LRFN1Q9P244 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LRFN1Q9P244 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LRFN1Q9P244 RPS8P6-201ENST00000426177 609 ntBASIC15.75■□□□□ 0.11
LRFN1Q9P244 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 AC005829.1-201ENST00000570002 483 ntBASIC15.75■□□□□ 0.11
LRFN1Q9P244 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 AC007064.4-201ENST00000637740 555 ntBASIC15.75■□□□□ 0.11
LRFN1Q9P244 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LRFN1Q9P244 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LRFN1Q9P244 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.75■□□□□ 0.11
LRFN1Q9P244 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms