Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 ANKRD20A18P-201ENST00000359341 492 ntBASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 CD70-202ENST00000423145 881 ntTSL 2 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 AC004263.2-201ENST00000617183 678 ntBASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 AC009154.2-201ENST00000621177 724 ntBASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 PCDHA1-201ENST00000378133 2726 ntBASIC14.86□□□□□ -0.03
CHMP1AQ9HD42 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 DET1-205ENST00000558413 583 ntTSL 4 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 AL031432.5-201ENST00000641059 760 ntBASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CHMP1AQ9HD42 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 AC112698.1-201ENST00000510299 916 ntBASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 PPOX-214ENST00000535223 664 ntTSL 3 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms